Motif HL_09260.1 Version HL_09260.1 of this group appears in releases 3.89 to 3.94
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_7VNV_007 | 7VNV | 0.3996 | 6 | A | tRNA | PSU | 13 | A | 14 | 7SN | 15 | C | 16 | OMC | 17 | G | 22 | cWW | |
| 2 | HL_5WT1_001 | 5WT1 | 0.0000 | 5 | tRNA D-loop | C | tRNA | C | 13 | A | 14 | G | 15 | C | 16 | C | 17 | G | 22 | cWW |
| 3 | HL_2FMT_004 | 2FMT | 0.3738 | 5 | D | FORMYL-METHIONYL-TRNAFMET2 | C | 13 | A | 14 | G | 15 | C | 16 | C | 17 | G | 22 | cWW | |
| 4 | HL_3AMU_001 | 3AMU | 0.5975 | 6 | tRNA D-loop | B | tRNA | U | 13 | A | 14 | G | 15 | C | 16 | C | 17 | G | 22 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| (PSU)A(7SN)C(OMC)UGGUUAG | 1 |
| CAGCCUGGGAG | 1 |
| CAGCCUGGAG | 1 |
| UAGCCAGGUCAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| A(7SN)C(OMC)UGGUUA | 1 |
| AGCCUGGGA | 1 |
| AGCCUGG(H2U)A | 1 |
| AGCCAGGUCA | 1 |
- Annotations
-
- (2)
- tRNA D-loop (2)
- Basepair signature
- cWW-F-F-F-F
- Heat map statistics
- Min 0.37 | Avg 0.38 | Max 0.63
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