Motif HL_14843.1 Version HL_14843.1 of this group appears in releases 3.77 to 3.87
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 1-4 | 2-3 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_6ORD_035 | 6ORD | 0.3259 | 6 | QY | tRNA | C | 13 | A | 14 | A | 21 | G | 22 | ncWW | ||
| 2 | HL_4V90_032 | 4V90 | 0.2329 | 6 | tRNA D-loop | AV | tRNA | C | 13 | A | 14 | A | 21 | G | 22 | cWW | ncWS |
| 3 | HL_7UQ6_001 | 7UQ6 | 0.1752 | 5 | tRNA D-loop | B | tRNA | C | 13 | A | 14 | A | 20 | G | 21 | cWW | |
| 4 | HL_4RDX_001 | 4RDX | 0.1455 | 7 | C | tRNA | C | 13 | A | 14 | A | 21 | G | 22 | cWW | ||
| 5 | HL_2CSX_001 | 2CSX | 0.0000 | 7 | tRNA D-loop | C | RNA (75-MER) | C | 13 | A | 14 | A | 21|||A | G | 22 | cWW | |
| 6 | HL_5WT1_001 | 5WT1 | 0.1424 | 7 | tRNA D-loop | C | tRNA | C | 13 | A | 14 | A | 21 | G | 22 | cWW | |
| 7 | HL_7EQJ_004 | 7EQJ | 0.1180 | 6 | tRNA D-loop | B | tRNA | C | 13 | A | 14 | A | 21 | G | 22 | cWW | |
| 8 | HL_1GAX_004 | 1GAX | 0.2165 | 5 | tRNA D-loop | D | TRNA(VAL) | C | 913 | A | 914 | A | 920 | G | 921 | cWW | |
| 9 | HL_5WWT_001 | 5WWT | 0.2077 | 5 | tRNA D-loop | C | tRNA | C | 13 | A | 14 | A | 21 | G | 22 | cWW | |
| 10 | HL_6UFG_006 | 6UFG | 0.2479 | 7 | tRNA D-loop | B | tRNA | C | 13 | A | 14 | A | 22 | G | 23 | cWW | |
| 11 | HL_5J7L_163 | 5J7L | 0.7131 | 4 | DA | LSU rRNA | G | 1171 | C | 1172 | G | 1177 | C | 1178 | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAGCUGGGAG | 2 |
| CAGCCGGUAG | 1 |
| CAGUGGUAG | 1 |
| CAGCUGGUUAG | 1 |
| CAGCUGGUCAG | 1 |
| CAGCCUGGGAG | 1 |
| CAGCGGAAG | 1 |
| CAGGGGUAG | 1 |
| CAGGCGGUUAG | 1 |
| GCUUAUGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGCUGGGA | 2 |
| AGCCGGUA | 1 |
| AGUGGUA | 1 |
| AGCUGGUUA | 1 |
| AGCUGGUCA | 1 |
| AGCCUGGGA | 1 |
| AGCGGAA | 1 |
| AGGGGUA | 1 |
| AGGCGGUUA | 1 |
| CUUAUG | 1 |
Release history
| Release | 3.77 | 3.78 | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2023-12-06 | 2024-01-03 | 2024-01-03 | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 | 2024-08-14 |
| Status | New id, > 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- tRNA D-loop (8)
- (3)
- Basepair signature
- cWW-cWS
- Heat map statistics
- Min 0.12 | Avg 0.32 | Max 0.88
Coloring options: