#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 41-42-3
1 HL_6ORD_0356ORD0.32596QY tRNAC13A14A21G22ncWW
2 HL_4V90_0324V900.23296tRNA D-loopAV tRNAC13A14A21G22cWWncWS
3 HL_7UQ6_0017UQ60.17525tRNA D-loopB tRNAC13A14A20G21cWW
4 HL_4RDX_0014RDX0.14557C tRNAC13A14A21G22cWW
5 HL_2CSX_0012CSX0.00007tRNA D-loopCRNA (75-MER)C13A14A21|||AG22cWW
6 HL_5WT1_0015WT10.14247tRNA D-loopC tRNAC13A14A21G22cWW
7 HL_7EQJ_0047EQJ0.11806tRNA D-loopB tRNAC13A14A21G22cWW
8 HL_1GAX_0041GAX0.21655tRNA D-loopDTRNA(VAL)C913A914A920G921cWW
9 HL_5WWT_0015WWT0.20775tRNA D-loopC tRNAC13A14A21G22cWW
10 HL_6UFG_0066UFG0.24797tRNA D-loopB tRNAC13A14A22G23cWW
11 HL_5J7L_1635J7L0.71314DA LSU rRNAG1171C1172G1177C1178ncWW

3D structures

Complete motif including flanking bases
SequenceCounts
CAGCUGGGAG2
CAGCCGGUAG1
CAGUGGUAG1
CAGCUGGUUAG1
CAGCUGGUCAG1
CAGCCUGGGAG1
CAGCGGAAG1
CAGGGGUAG1
CAGGCGGUUAG1
GCUUAUGC1
Non-Watson-Crick part of the motif
SequenceCounts
AGCUGGGA2
AGCCGGUA1
AGUGGUA1
AGCUGGUUA1
AGCUGGUCA1
AGCCUGGGA1
AGCGGAA1
AGGGGUA1
AGGCGGUUA1
CUUAUG1

Release history

Release3.773.783.793.803.813.823.833.843.853.863.87
Date2023-12-062024-01-032024-01-032024-01-312024-02-282024-03-272024-04-242024-05-222024-06-192024-07-172024-08-14
StatusNew id, > 2 parentsExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • tRNA D-loop (8)
  • (3)
  • Basepair signature
    cWW-cWS
    Heat map statistics
    Min 0.12 | Avg 0.32 | Max 0.88
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