RNA 3D Hub //

Motif HL_14843.1 Version HL_14843.1 of this group appears in releases 3.77 to 3.87

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 41-42-3
1 HL_6ORD_0356ORD0.32596QY tRNAC13A14A21G22ncWW
2 HL_4V90_0324V900.23296tRNA D-loopAV tRNAC13A14A21G22cWWncWS
3 HL_7UQ6_0017UQ60.17525tRNA D-loopB tRNAC13A14A20G21cWW
4 HL_4RDX_0014RDX0.14557C tRNAC13A14A21G22cWW
5 HL_2CSX_0012CSX0.00007tRNA D-loopCRNA (75-MER)C13A14A21|||AG22cWW
6 HL_5WT1_0015WT10.14247tRNA D-loopC tRNAC13A14A21G22cWW
7 HL_7EQJ_0047EQJ0.11806tRNA D-loopB tRNAC13A14A21G22cWW
8 HL_1GAX_0041GAX0.21655tRNA D-loopDTRNA(VAL)C913A914A920G921cWW
9 HL_5WWT_0015WWT0.20775tRNA D-loopC tRNAC13A14A21G22cWW
10 HL_6UFG_0066UFG0.24797tRNA D-loopB tRNAC13A14A22G23cWW
11 HL_5J7L_1635J7L0.71314DA LSU rRNAG1171C1172G1177C1178ncWW

3D structures

Complete motif including flanking bases
SequenceCounts
CAGCUGGGAG2
CAGCCGGUAG1
CAGUGGUAG1
CAGCUGGUUAG1
CAGCUGGUCAG1
CAGCCUGGGAG1
CAGCGGAAG1
CAGGGGUAG1
CAGGCGGUUAG1
GCUUAUGC1
Non-Watson-Crick part of the motif
SequenceCounts
AGCUGGGA2
AGCCGGUA1
AGUGGUA1
AGCUGGUUA1
AGCUGGUCA1
AGCCUGGGA1
AGCGGAA1
AGGGGUA1
AGGCGGUUA1
CUUAUG1

Release history

Release3.773.783.793.803.813.823.833.843.853.863.87
Date2023-12-062024-01-032024-01-032024-01-312024-02-282024-03-272024-04-242024-05-222024-06-192024-07-172024-08-14
StatusNew id, > 2 parentsExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • tRNA D-loop (8)
  • (3)
    • Basepair signature
    cWW-cWS
    Heat map statistics
    Min 0.12 | Avg 0.32 | Max 0.88
    Help

    Coloring options:

    HL_6ORD_035:HL_6ORD_035 = 0HL_6ORD_035:HL_4V90_032 = 0.2428HL_6ORD_035:HL_7UQ6_001 = 0.2771HL_6ORD_035:HL_4RDX_001 = 0.295HL_6ORD_035:HL_2CSX_001 = 0.3259HL_6ORD_035:HL_5WT1_001 = 0.354HL_6ORD_035:HL_7EQJ_004 = 0.3273HL_6ORD_035:HL_1GAX_004 = 0.4028HL_6ORD_035:HL_5WWT_001 = 0.3887HL_6ORD_035:HL_6UFG_006 = 0.3952HL_6ORD_035:HL_5J7L_163 = 0.7756HL_4V90_032:HL_6ORD_035 = 0.2428HL_4V90_032:HL_4V90_032 = 0HL_4V90_032:HL_7UQ6_001 = 0.1726HL_4V90_032:HL_4RDX_001 = 0.1882HL_4V90_032:HL_2CSX_001 = 0.2329HL_4V90_032:HL_5WT1_001 = 0.2914HL_4V90_032:HL_7EQJ_004 = 0.236HL_4V90_032:HL_1GAX_004 = 0.3399HL_4V90_032:HL_5WWT_001 = 0.35HL_4V90_032:HL_6UFG_006 = 0.3261HL_4V90_032:HL_5J7L_163 = 0.7533HL_7UQ6_001:HL_6ORD_035 = 0.2771HL_7UQ6_001:HL_4V90_032 = 0.1726HL_7UQ6_001:HL_7UQ6_001 = 0HL_7UQ6_001:HL_4RDX_001 = 0.13HL_7UQ6_001:HL_2CSX_001 = 0.1752HL_7UQ6_001:HL_5WT1_001 = 0.1839HL_7UQ6_001:HL_7EQJ_004 = 0.1369HL_7UQ6_001:HL_1GAX_004 = 0.2504HL_7UQ6_001:HL_5WWT_001 = 0.2558HL_7UQ6_001:HL_6UFG_006 = 0.2211HL_7UQ6_001:HL_5J7L_163 = 0.7137HL_4RDX_001:HL_6ORD_035 = 0.295HL_4RDX_001:HL_4V90_032 = 0.1882HL_4RDX_001:HL_7UQ6_001 = 0.13HL_4RDX_001:HL_4RDX_001 = 0HL_4RDX_001:HL_2CSX_001 = 0.1455HL_4RDX_001:HL_5WT1_001 = 0.4752HL_4RDX_001:HL_7EQJ_004 = 0.1431HL_4RDX_001:HL_1GAX_004 = 0.2516HL_4RDX_001:HL_5WWT_001 = 0.4788HL_4RDX_001:HL_6UFG_006 = 0.6174HL_4RDX_001:HL_5J7L_163 = 0.6607HL_2CSX_001:HL_6ORD_035 = 0.3259HL_2CSX_001:HL_4V90_032 = 0.2329HL_2CSX_001:HL_7UQ6_001 = 0.1752HL_2CSX_001:HL_4RDX_001 = 0.1455HL_2CSX_001:HL_2CSX_001 = 0HL_2CSX_001:HL_5WT1_001 = 0.1424HL_2CSX_001:HL_7EQJ_004 = 0.118HL_2CSX_001:HL_1GAX_004 = 0.2165HL_2CSX_001:HL_5WWT_001 = 0.2077HL_2CSX_001:HL_6UFG_006 = 0.2479HL_2CSX_001:HL_5J7L_163 = 0.7131HL_5WT1_001:HL_6ORD_035 = 0.354HL_5WT1_001:HL_4V90_032 = 0.2914HL_5WT1_001:HL_7UQ6_001 = 0.1839HL_5WT1_001:HL_4RDX_001 = 0.4752HL_5WT1_001:HL_2CSX_001 = 0.1424HL_5WT1_001:HL_5WT1_001 = 0HL_5WT1_001:HL_7EQJ_004 = 0.1217HL_5WT1_001:HL_1GAX_004 = 0.2077HL_5WT1_001:HL_5WWT_001 = 0.5082HL_5WT1_001:HL_6UFG_006 = 0.4596HL_5WT1_001:HL_5J7L_163 = 0.6875HL_7EQJ_004:HL_6ORD_035 = 0.3273HL_7EQJ_004:HL_4V90_032 = 0.236HL_7EQJ_004:HL_7UQ6_001 = 0.1369HL_7EQJ_004:HL_4RDX_001 = 0.1431HL_7EQJ_004:HL_2CSX_001 = 0.118HL_7EQJ_004:HL_5WT1_001 = 0.1217HL_7EQJ_004:HL_7EQJ_004 = 0HL_7EQJ_004:HL_1GAX_004 = 0.1615HL_7EQJ_004:HL_5WWT_001 = 0.1744HL_7EQJ_004:HL_6UFG_006 = 0.1985HL_7EQJ_004:HL_5J7L_163 = 0.7304HL_1GAX_004:HL_6ORD_035 = 0.4028HL_1GAX_004:HL_4V90_032 = 0.3399HL_1GAX_004:HL_7UQ6_001 = 0.2504HL_1GAX_004:HL_4RDX_001 = 0.2516HL_1GAX_004:HL_2CSX_001 = 0.2165HL_1GAX_004:HL_5WT1_001 = 0.2077HL_1GAX_004:HL_7EQJ_004 = 0.1615HL_1GAX_004:HL_1GAX_004 = 0HL_1GAX_004:HL_5WWT_001 = 0.2155HL_1GAX_004:HL_6UFG_006 = 0.2714HL_1GAX_004:HL_5J7L_163 = 0.8778HL_5WWT_001:HL_6ORD_035 = 0.3887HL_5WWT_001:HL_4V90_032 = 0.35HL_5WWT_001:HL_7UQ6_001 = 0.2558HL_5WWT_001:HL_4RDX_001 = 0.4788HL_5WWT_001:HL_2CSX_001 = 0.2077HL_5WWT_001:HL_5WT1_001 = 0.5082HL_5WWT_001:HL_7EQJ_004 = 0.1744HL_5WWT_001:HL_1GAX_004 = 0.2155HL_5WWT_001:HL_5WWT_001 = 0HL_5WWT_001:HL_6UFG_006 = 0.2132HL_5WWT_001:HL_5J7L_163 = 0.7125HL_6UFG_006:HL_6ORD_035 = 0.3952HL_6UFG_006:HL_4V90_032 = 0.3261HL_6UFG_006:HL_7UQ6_001 = 0.2211HL_6UFG_006:HL_4RDX_001 = 0.6174HL_6UFG_006:HL_2CSX_001 = 0.2479HL_6UFG_006:HL_5WT1_001 = 0.4596HL_6UFG_006:HL_7EQJ_004 = 0.1985HL_6UFG_006:HL_1GAX_004 = 0.2714HL_6UFG_006:HL_5WWT_001 = 0.2132HL_6UFG_006:HL_6UFG_006 = 0HL_6UFG_006:HL_5J7L_163 = 0.6388HL_5J7L_163:HL_6ORD_035 = 0.7756HL_5J7L_163:HL_4V90_032 = 0.7533HL_5J7L_163:HL_7UQ6_001 = 0.7137HL_5J7L_163:HL_4RDX_001 = 0.6607HL_5J7L_163:HL_2CSX_001 = 0.7131HL_5J7L_163:HL_5WT1_001 = 0.6875HL_5J7L_163:HL_7EQJ_004 = 0.7304HL_5J7L_163:HL_1GAX_004 = 0.8778HL_5J7L_163:HL_5WWT_001 = 0.7125HL_5J7L_163:HL_6UFG_006 = 0.6388HL_5J7L_163:HL_5J7L_163 = 0HL_6ORD_035HL_4V90_032HL_7UQ6_001HL_4RDX_001HL_2CSX_001HL_5WT1_001HL_7EQJ_004HL_1GAX_004HL_5WWT_001HL_6UFG_006HL_5J7L_163Discrepancy0.000.200.400.600.80
    Copyright 2025 BGSU RNA group. Page generated in 0.2048 s