Motif HL_20739.1 Version HL_20739.1 of this group appears in releases 0.3 to 0.8
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-8 | 3-7 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_2XZM_032 | 2XZM | 0.5244 | 3 | A | SSU rRNA | U | 1522 | U | 1523 | U | 1524 | G | 1525 | G | 1526 | A | 1527 | A | 1528 | U | 1532 | G | 1533 | ncWW | ntWH | |
| 2 | HL_3U5F_034 | 3U5F | 0.0000 | 3 | 6 | SSU rRNA | A | 1550 | U | 1551 | U | 1552 | G | 1553 | U | 1554 | A | 1555 | A | 1556 | U | 1560 | U | 1561 | cWW | ncWH | tWH |
| 3 | HL_1P6V_002 | 1P6V | 0.5215 | 2 | B | tmRNA | G | 44 | G | 45 | U | 46 | U | 47 | C | 48 | G | 49 | A | 50 | C | 53 | C | 54 | cWW | cWW | ntWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUUGGAAUUGUG | 1 |
| AUUGUAAUUAUU | 1 |
| GGUUCGAUUCC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUGGAAUUGU | 1 |
| UUGUAAUUAU | 1 |
| GUUCGAUUC | 1 |
Release history
| Release | 0.3 | 0.4 | 0.5 | 0.6 | 0.7 | 0.8 |
|---|---|---|---|---|---|---|
| Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_20739.1 | Only in the parent motif |
|---|---|---|---|
| HL_95197.1 Compare | HL_2XZM_032 | HL_1P6V_002, HL_3U5F_034 | |
| HL_92905.1 Compare | HL_1P6V_002 | HL_3U5F_034, HL_2XZM_032 |
Children motifs
| Child motif | Common motif instances | Only in HL_20739.1 | Only in the child motif |
|---|---|---|---|
| HL_67367.1 Compare | HL_2XZM_032 | HL_1P6V_002, HL_3U5F_034 | HL_3RG5_002 |
| HL_12984.1 Compare | HL_1P6V_002 | HL_3U5F_034, HL_2XZM_032 | |
| HL_13105.1 Compare | HL_3U5F_034 | HL_1P6V_002, HL_2XZM_032 |
- Annotations
-
- (3)
- Basepair signature
- cWW-R-tWH-R-R-R
- Heat map statistics
- Min 0.52 | Avg 0.36 | Max 0.58
Coloring options: