Motif HL_20751.2 Version HL_20751.2 of this group appears in releases 3.88 to 3.97
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 1-13 | 2-10 | 2-11 | 3-7 | 3-10 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3DIL_001 | 3DIL | 0.0892 | 1 | A | RNA (174-MER) | C | 41 | A | 42 | G | 43 | G | 44 | G | 45 | G | 46 | A | 47 | G | 48 | G | 49 | A | 50 | A | 51 | U | 52 | G | 54 | cWW | tHW | ncHH | ||
| 2 | HL_3D0U_001 | 3D0U | 0.0000 | 1 | A | Lysine Riboswitch RNA | C | 38 | A | 39 | G | 40 | G | 41 | G | 42 | G | 43 | A | 44 | G | 45 | G | 46 | A | 47 | A | 48 | U | 49 | G | 51 | cWW | tHW | ncHH | ||
| 3 | HL_3SUX_005 | 3SUX | 0.9348 | 0 | X | THF riboswitch | G | 37 | A | 38 | C | 39 | G | 40 | G | 41 | G | 42 | G | 43 | A | 44 | G | 45 | U | 46 | U | 47 | G | 48 | U | 49 | cWW | ncWW | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAGGGGAGGAAUCG | 2 |
| GACGGGGAGUUGU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGGGGAGGAAUC | 2 |
| ACGGGGAGUUG | 1 |
Release history
| Release | 3.88 | 3.89 | 3.90 | 3.91 | 3.92 | 3.93 | 3.94 | 3.95 | 3.96 | 3.97 |
|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2024-09-11 | 2024-10-09 | 2024-11-06 | 2024-12-04 | 2025-01-01 | 2025-01-29 | 2025-02-26 | 2025-03-26 | 2025-04-23 | 2025-05-21 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-tHW-F-F-F-F-F-F-F-F-F
- Heat map statistics
- Min 0.09 | Avg 0.44 | Max 0.97
Coloring options: