HL_25462.4

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2		3		4		5	1-5	2-4	4-5
1	HL_4WT8_215	4WT8	0.2548	6	tRNA D-loop	D4	tRNA	C	13	A	14	G	15	A	22	G	23	cWW	ncWS
2	HL_3AKZ_010	3AKZ	0.3432	4	tRNA D-loop	E	tRNA	U	13	A	14	A	15	A	21	G	22	cWW	cWS
3	HL_3AL0_001	3AL0	0.2269	4	tRNA D-loop	E	tRNA	U	13	A	14	A	15	A	21	G	22	cWW	cWS
4	HL_5B63_003	5B63	0.1946	6	tRNA D-loop	D	tRNA	C	913	A	914	A	915	A	922	G	923	cWW	ncWS
5	HL_4TUE_033	4TUE	0.1473	6	tRNA D-loop	QV	tRNA	C	12	A	13	G	14	A	21	G	22	cWW	cWS
6	HL_6CFJ_106	6CFJ	0.1640	6	tRNA D-loop	1x	tRNA	C	13	A	14	G	15	A	21	G	22	cWW	cWS
7	HL_4V9Q_213	4V9Q	0.2450	6	tRNA D-loop	DV	tRNA	C	13	A	14	G	15	A	21	G	22	cWW		ncSH
8	HL_5E81_211	5E81	0.0982	6	tRNA D-loop	2K	tRNA	C	13	A	14	G	15	A	22	G	23	cWW	cWS
9	HL_1QF6_001	1QF6	0.0000	5	tRNA D-loop	B	tRNA	C	13	A	14	G	15	A	21	G	22	cWW	cWS
10	HL_5AXM_001	5AXM	0.1407	5	tRNA D-loop	P	tRNA	C	13	A	14	G	15	A	21	G	22	cWW	ncWS
11	HL_8SP9_001	8SP9	0.2207	5	tRNA D-loop	C	Enterovirus 5' cloverleaf cis-acting replication element	C	13	A	14	G	15	A	21	G	22	cWW	ncWS
12	HL_1FIR_001	1FIR	0.2300	5	tRNA D-loop	A	tRNA	C	13	A	14	G	15	A	21	G	22	cWW	cWS
13	HL_1FIR_004	1FIR	0.2300	5	tRNA D-loop	A	tRNA	C	13	A	14	G	15	A	21	G	22	cWW	cWS
14	HL_7LYF_001	7LYF	0.1964	5	tRNA D-loop	A	Dengue virus SLA	C	13	A	14	G	15	A	21	G	22	cWW	ncWS
15	HL_7MRL_001	7MRL	0.1111	5	tRNA D-loop	A	tRNA	C	13	A	14	G	15	A	21	G	22	cWW	ncWS
16	HL_3FOZ_004	3FOZ	0.0938	5	tRNA D-loop	D	tRNA	C	13	A	14	G	15	A	21	G	22	cWW	cWS
17	HL_3TUP_001	3TUP	0.1399	5	tRNA D-loop	T	tRNA	C	13	A	14	G	15	A	21	G	22	cWW	ncWS
18	HL_2AZX_004	2AZX	0.2169	4	tRNA D-loop	D	tRNA	C	513	A	514	A	515	A	521	G	522	cWW	cWS
19	HL_3EPH_001	3EPH	0.1638	4	tRNA D-loop	E	tRNA	C	13	A	14	G	15	A	21	G	22	cWW	cWS
20	HL_6JXM_001	6JXM	0.2238	4	tRNA D-loop	B	tRNA	C	13	A	14	G	15	A	20	G	21	cWW	ncWS
21	HL_1J1U_001	1J1U	0.1337	6	tRNA D-loop	B	tRNA	C	513	A	514	G	515	A	522	G	523	cWW	ncWS
22	HL_2ZUE_001	2ZUE	0.2965	7	tRNA D-loop	B	tRNA	U	913	A	914	G	915	A	921	G	922	cWW	cWS
23	HL_3AMU_001	3AMU	0.3537	7	tRNA D-loop	B	tRNA	U	13	A	14	G	15	A	21\|\|\|C	G	22	cWW	ncWS

3D structures

Complete motif including flanking bases

Sequence	Counts
CAGCCUGGUAG	5
CAGUCGGUAG	4
UAACGGUAG	2
CAG(H2U)CGG(H2U)AG	2
CAGUGGUAG	2
CAAUUGGAUAG	1
CAGCCCGGUAG	1
CAGGGAG	1
CAGUUGGGAG	1
CAGUUGGUAG	1
CAAUGGUAG	1
UAGCCAGGACAG	1
UAGCCAGGUCAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
AGCCUGGUA	5
AGUCGGUA	4
AACGGUA	2
AG(H2U)CGG(H2U)A	2
AGUGGUA	2
AAUUGGAUA	1
AGCCCGGUA	1
AG(H2U)(H2U)GG(H2U)A	1
AGUUGGGA	1
AGUUGGUA	1
AAUGGUA	1
AGCCAGGACA	1
AGCCAGGUCA	1

Release history

Release	3.88
Date	2024-09-11
Status	Updated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif HL_25462.4 Version HL_25462.4 of this group appears in releases 3.88 to 3.88 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif HL_25462.4 Version HL_25462.4 of this group appears in releases 3.88 to 3.88

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Csv

Json