Motif HL_27670.1 Version HL_27670.1 of this group appears in releases 3.91 to 3.94
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | 2-3 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4FRN_007 | 4FRN | 0.1918 | 3 | T-loop with unstacked turn | B | Cobalamin riboswitch aptamer domain | G | 56 | U | 57 | A | 61 | C | 62 | U | 63 | C | 64 | cWW | tWH |
| 2 | HL_4FRG_003 | 4FRG | 0.1967 | 3 | T-loop with unstacked turn | B | cobalamin riboswitch aptamer domain | G | 58 | U | 59 | A | 63 | C | 64 | U | 65 | C | 66 | cWW | tWH |
| 3 | HL_6DN2_004 | 6DN2 | 0.2096 | 2 | T-loop with unstacked turn | Y | RNA (56-MER) | G | 88 | U | 89 | A | 92 | G | 93 | U | 94 | C | 95 | cWW | tWH |
| 4 | HL_3F2X_005 | 3F2X | 0.2189 | 2 | T-loop with unstacked turn | X | FMN riboswitch | G | 88 | U | 89 | A | 92 | G | 93 | U | 94 | C | 95 | cWW | tWH |
| 5 | HL_3F2X_002 | 3F2X | 0.1238 | 2 | T-loop with unstacked turn | X | FMN riboswitch | G | 36 | U | 37 | A | 40 | G | 41 | U | 42 | C | 43 | cWW | tWH |
| 6 | HL_6DN2_002 | 6DN2 | 0.0000 | 2 | T-loop with unstacked turn | X | RNA RIBOSWITCH | G | 36 | U | 37 | A | 40 | G | 41 | U | 42 | C | 43 | cWW | tWH |
| 7 | HL_8P9A_119 | 8P9A | 0.3016 | 3 | T-loop with unstacked turn (H) | AR | LSU rRNA | G | 216 | U | 217 | A | 221 | A | 222 | U | 223 | C | 224 | cWW | tWH |
| 8 | HL_9DFE_011 | 9DFE | 0.2894 | 3 | T-loop with unstacked turn (H) | 1A | LSU rRNA | G | 327 | U | 328 | A | 332 | G | 333 | C | 334 | C | 335 | cWW | tWH |
| 9 | HL_4V9F_012 | 4V9F | 0.3012 | 3 | T-loop with unstacked turn | 0 | LSU rRNA | G | 334 | U | 335 | A | 339 | A | 340 | C | 341 | C | 342 | cWW | tWH |
| 10 | HL_5J7L_144 | 5J7L | 0.2498 | 3 | T-loop with unstacked turn | DA | LSU rRNA | G | 327 | U | 328 | A | 332 | G | 333 | C | 334 | C | 335 | cWW | tWH |
| 11 | HL_4WF9_012 | 4WF9 | 0.3012 | 3 | T-loop with unstacked turn | X | LSU rRNA | G | 370 | U | 371 | A | 375 | A | 376 | U | 377 | C | 378 | cWW | ntWH |
| 12 | HL_7A0S_012 | 7A0S | 0.5295 | 3 | T-loop with unstacked turn | X | LSU rRNA | G | 338 | U | 339 | A | 343 | G | 344 | U | 345 | C | 346 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUUAUACUC | 2 |
| GUAGAGUC | 2 |
| GUAUAGUC | 2 |
| GUGAGAAUC | 1 |
| GUGAAAGCC | 1 |
| GUGACAACC | 1 |
| GUGACAGCC | 1 |
| GUAAUAAUC | 1 |
| GUGAGAGUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUAUACU | 2 |
| UAGAGU | 2 |
| UAUAGU | 2 |
| UGAGAAU | 1 |
| UGAAAGC | 1 |
| UGACAAC | 1 |
| UGACAGC | 1 |
| UAAUAAU | 1 |
| UGAGAGU | 1 |
- Annotations
-
- T-loop with unstacked turn (10)
- T-loop with unstacked turn (H) (2)
- Basepair signature
- cWW-tWH-F-F
- Heat map statistics
- Min 0.07 | Avg 0.29 | Max 0.59
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