Motif HL_28421.1 Version HL_28421.1 of this group appears in releases 3.88 to 3.88
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 1-3 | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_8JY0_002 | 8JY0 | 0.5071 | 4 | B | RhoBAST | U | 30 | G | 31 | A | 36 | cWW |
| 2 | HL_9BUN_002 | 9BUN | 0.4895 | 4 | A | RNA (48-MER) | U | 14 | G | 15 | A | 20 | cWW |
| 3 | HL_8C3A_054 | 8C3A | 0.3680 | 2 | 1 | LSU rRNA | C | 2543 | U | 2544 | G | 2547 | cWW |
| 4 | HL_8UO6_007 | 8UO6 | 0.3946 | 4 | B | HIV-1 Rev Response Element Stem-Loop II with tRNA scaffold | A | 77 | A | 78 | U | 83 | cWW |
| 5 | HL_4WF9_038 | 4WF9 | 0.2982 | 5 | X | LSU rRNA | C | 1656 | G | 1657 | G | 1663 | cWW |
| 6 | HL_8VTW_039 | 8VTW | 0.3188 | 5 | 1A | LSU rRNA | C | 1612 | G | 1613 | G | 1619 | cWW |
| 7 | HL_7A0S_040 | 7A0S | 0.3403 | 5 | X | LSU rRNA | C | 1628 | G | 1629 | G | 1635 | cWW |
| 8 | HL_4V9F_042 | 4V9F | 0.3265 | 5 | 0 | LSU rRNA | C | 1687 | G | 1688 | G | 1694 | cWW |
| 9 | HL_8C3A_041 | 8C3A | 0.3462 | 5 | 1 | LSU rRNA | C | 1840 | G | 1841 | G | 1847 | cWW |
| 10 | HL_5TBW_041 | 5TBW | 0.2976 | 5 | 1 | LSU rRNA | C | 1844 | G | 1845 | G | 1851 | cWW |
| 11 | HL_8KAL_003 | 8KAL | 0.0000 | 2 | A | tracrRNA | G | 87 | A | 88 | C | 91 | cWW |
| 12 | HL_8C3A_026 | 8C3A | 0.1869 | 5 | 1 | LSU rRNA | G | 1144 | G | 1145 | C | 1151 | cWW |
| 13 | HL_5TBW_026 | 5TBW | 0.2059 | 5 | 1 | LSU rRNA | G | 1148 | G | 1149 | C | 1155 | cWW |
| 14 | HL_4WF9_028 | 4WF9 | 0.2052 | 5 | X | LSU rRNA | G | 1022 | A | 1023 | C | 1029 | cWW |
| 15 | HL_5J7L_160 | 5J7L | 0.2291 | 5 | DA | LSU rRNA | G | 978 | A | 979 | C | 985 | cWW |
| 16 | HL_7A0S_027 | 7A0S | 0.3054 | 5 | X | LSU rRNA | G | 989 | A | 990 | C | 996 | cWW |
| 17 | HL_8VTW_027 | 8VTW | 0.3163 | 5 | 1A | LSU rRNA | G | 978 | G | 979 | C | 985 | cWW |
| 18 | HL_4V9F_029 | 4V9F | 0.3600 | 5 | 0 | LSU rRNA | G | 1076 | G | 1077 | C | 1083 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGACACAG | 4 |
| UGAAGGA | 2 |
| CGCAGCAG | 2 |
| GGAUGAAC | 2 |
| GAAACAAC | 2 |
| GGAACAAC | 2 |
| CUCUG | 1 |
| AAUUAUU | 1 |
| GAGUC | 1 |
| GAAACAGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GACACA | 4 |
| GAAGG | 2 |
| GCAGCA | 2 |
| GAUGAA | 2 |
| AAACAA | 2 |
| GAACAA | 2 |
| UCU | 1 |
| AUUAU | 1 |
| AGU | 1 |
| AAACAG | 1 |
Release history
| Release | 3.88 |
|---|---|
| Date | 2024-09-11 |
| Status | New id, > 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.
Coloring options: