RNA 3D Hub //

Motif HL_30068.1 Version HL_30068.1 of this group appears in releases 3.91 to 3.94

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5 61-62-5
1 HL_7A0S_0067A0S0.10162X LSU rRNAG171A172A174C175U177C178cWWntSH
2 HL_9DFE_0059DFE0.066521A LSU rRNAG194A195A197C198U200C201cWWntSH
3 HL_5J7L_1395J7L0.00002DA LSU rRNAG194A195A197C198U200C201cWWntSH
4 HL_4WF9_0064WF90.06872X LSU rRNAG197A198A200C201U203C204cWWtSH
5 HL_4V9F_0064V9F0.099020 LSU rRNAG164A165A167C168U170C171cWWtSH
6 HL_8P9A_1138P9A0.11682AR LSU rRNAU38A39G41C42U44A45cWWtSH
7 HL_4WF9_0584WF90.57161X LSU rRNAC2578U2579G2580U2581C2583G2584cWW
8 HL_7A0S_0617A0S0.61711X LSU rRNAC2530U2531G2532U2533C2535G2536cWW
9 HL_9DFE_0609DFE0.591911A LSU rRNAC2551OMU2552G2553U2554C2556G2557cWW
10 HL_5J7L_1955J7L0.58281DA LSU rRNAC2551OMU2552G2553U2554C2556G2557cWW
11 HL_4V9F_0734V9F0.624510 LSU rRNAU2586OMU2587OMG2588U2589C2591G2592cWWa
12 HL_8P9A_1748P9A0.60331AR LSU rRNAU2920U2921G2922U2923C2925A2926cWW
13 HL_3DIL_0033DIL0.59941GNRAARNA (174-MER)G124G125A126A127A129C130cWWtSH

3D structures

Complete motif including flanking bases
SequenceCounts
GAAACAUC5
CUGUUCG2
UAAGCAUA1
C(OMU)GUUCG1
CGUUCG1
U(OMU)(OMG)UUCG1
UUGUUCA1
GGAAUAC1
Non-Watson-Crick part of the motif
SequenceCounts
AAACAU5
UGUUC3
(OMU)GUUC2
AAGCAU1
(OMU)(OMG)UUC1
GAAUA1

Release history

Release3.913.923.933.94
Date2024-12-042025-01-012025-01-292025-02-26
StatusNew id, 1 parentExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (12)
  • GNRA (1)
    • Basepair signature
    cWW-F-F-F-F
    Heat map statistics
    Min 0.07 | Avg 0.39 | Max 0.69
    Help

    Coloring options:

    HL_7A0S_006:HL_7A0S_006 = 0HL_7A0S_006:HL_9DFE_005 = 0.0985HL_7A0S_006:HL_5J7L_139 = 0.1016HL_7A0S_006:HL_4WF9_006 = 0.1175HL_7A0S_006:HL_4V9F_006 = 0.1466HL_7A0S_006:HL_8P9A_113 = 0.1336HL_7A0S_006:HL_4WF9_058 = 0.5925HL_7A0S_006:HL_7A0S_061 = 0.6293HL_7A0S_006:HL_9DFE_060 = 0.6068HL_7A0S_006:HL_5J7L_195 = 0.5987HL_7A0S_006:HL_4V9F_073 = 0.6345HL_7A0S_006:HL_8P9A_174 = 0.6181HL_7A0S_006:HL_3DIL_003 = 0.6176HL_9DFE_005:HL_7A0S_006 = 0.0985HL_9DFE_005:HL_9DFE_005 = 0HL_9DFE_005:HL_5J7L_139 = 0.0665HL_9DFE_005:HL_4WF9_006 = 0.0891HL_9DFE_005:HL_4V9F_006 = 0.099HL_9DFE_005:HL_8P9A_113 = 0.1355HL_9DFE_005:HL_4WF9_058 = 0.57HL_9DFE_005:HL_7A0S_061 = 0.6098HL_9DFE_005:HL_9DFE_060 = 0.5863HL_9DFE_005:HL_5J7L_195 = 0.5813HL_9DFE_005:HL_4V9F_073 = 0.6211HL_9DFE_005:HL_8P9A_174 = 0.6032HL_9DFE_005:HL_3DIL_003 = 0.6018HL_5J7L_139:HL_7A0S_006 = 0.1016HL_5J7L_139:HL_9DFE_005 = 0.0665HL_5J7L_139:HL_5J7L_139 = 0HL_5J7L_139:HL_4WF9_006 = 0.0687HL_5J7L_139:HL_4V9F_006 = 0.099HL_5J7L_139:HL_8P9A_113 = 0.1168HL_5J7L_139:HL_4WF9_058 = 0.5716HL_5J7L_139:HL_7A0S_061 = 0.6171HL_5J7L_139:HL_9DFE_060 = 0.5919HL_5J7L_139:HL_5J7L_195 = 0.5828HL_5J7L_139:HL_4V9F_073 = 0.6245HL_5J7L_139:HL_8P9A_174 = 0.6033HL_5J7L_139:HL_3DIL_003 = 0.5994HL_4WF9_006:HL_7A0S_006 = 0.1175HL_4WF9_006:HL_9DFE_005 = 0.0891HL_4WF9_006:HL_5J7L_139 = 0.0687HL_4WF9_006:HL_4WF9_006 = 0HL_4WF9_006:HL_4V9F_006 = 0.1042HL_4WF9_006:HL_8P9A_113 = 0.1099HL_4WF9_006:HL_4WF9_058 = 0.5786HL_4WF9_006:HL_7A0S_061 = 0.6233HL_4WF9_006:HL_9DFE_060 = 0.5973HL_4WF9_006:HL_5J7L_195 = 0.5867HL_4WF9_006:HL_4V9F_073 = 0.6351HL_4WF9_006:HL_8P9A_174 = 0.6085HL_4WF9_006:HL_3DIL_003 = 0.5982HL_4V9F_006:HL_7A0S_006 = 0.1466HL_4V9F_006:HL_9DFE_005 = 0.099HL_4V9F_006:HL_5J7L_139 = 0.099HL_4V9F_006:HL_4WF9_006 = 0.1042HL_4V9F_006:HL_4V9F_006 = 0HL_4V9F_006:HL_8P9A_113 = 0.121HL_4V9F_006:HL_4WF9_058 = 0.559HL_4V9F_006:HL_7A0S_061 = 0.6022HL_4V9F_006:HL_9DFE_060 = 0.5832HL_4V9F_006:HL_5J7L_195 = 0.5758HL_4V9F_006:HL_4V9F_073 = 0.6181HL_4V9F_006:HL_8P9A_174 = 0.6051HL_4V9F_006:HL_3DIL_003 = 0.64HL_8P9A_113:HL_7A0S_006 = 0.1336HL_8P9A_113:HL_9DFE_005 = 0.1355HL_8P9A_113:HL_5J7L_139 = 0.1168HL_8P9A_113:HL_4WF9_006 = 0.1099HL_8P9A_113:HL_4V9F_006 = 0.121HL_8P9A_113:HL_8P9A_113 = 0HL_8P9A_113:HL_4WF9_058 = 0.5481HL_8P9A_113:HL_7A0S_061 = 0.5911HL_8P9A_113:HL_9DFE_060 = 0.5647HL_8P9A_113:HL_5J7L_195 = 0.5576HL_8P9A_113:HL_4V9F_073 = 0.6065HL_8P9A_113:HL_8P9A_174 = 0.587HL_8P9A_113:HL_3DIL_003 = 0.593HL_4WF9_058:HL_7A0S_006 = 0.5925HL_4WF9_058:HL_9DFE_005 = 0.57HL_4WF9_058:HL_5J7L_139 = 0.5716HL_4WF9_058:HL_4WF9_006 = 0.5786HL_4WF9_058:HL_4V9F_006 = 0.559HL_4WF9_058:HL_8P9A_113 = 0.5481HL_4WF9_058:HL_4WF9_058 = 0HL_4WF9_058:HL_7A0S_061 = 0.1263HL_4WF9_058:HL_9DFE_060 = 0.1358HL_4WF9_058:HL_5J7L_195 = 0.1395HL_4WF9_058:HL_4V9F_073 = 0.1826HL_4WF9_058:HL_8P9A_174 = 0.1992HL_4WF9_058:HL_3DIL_003 = 0.6517HL_7A0S_061:HL_7A0S_006 = 0.6293HL_7A0S_061:HL_9DFE_005 = 0.6098HL_7A0S_061:HL_5J7L_139 = 0.6171HL_7A0S_061:HL_4WF9_006 = 0.6233HL_7A0S_061:HL_4V9F_006 = 0.6022HL_7A0S_061:HL_8P9A_113 = 0.5911HL_7A0S_061:HL_4WF9_058 = 0.1263HL_7A0S_061:HL_7A0S_061 = 0HL_7A0S_061:HL_9DFE_060 = 0.1671HL_7A0S_061:HL_5J7L_195 = 0.1908HL_7A0S_061:HL_4V9F_073 = 0.189HL_7A0S_061:HL_8P9A_174 = 0.2304HL_7A0S_061:HL_3DIL_003 = 0.6698HL_9DFE_060:HL_7A0S_006 = 0.6068HL_9DFE_060:HL_9DFE_005 = 0.5863HL_9DFE_060:HL_5J7L_139 = 0.5919HL_9DFE_060:HL_4WF9_006 = 0.5973HL_9DFE_060:HL_4V9F_006 = 0.5832HL_9DFE_060:HL_8P9A_113 = 0.5647HL_9DFE_060:HL_4WF9_058 = 0.1358HL_9DFE_060:HL_7A0S_061 = 0.1671HL_9DFE_060:HL_9DFE_060 = 0HL_9DFE_060:HL_5J7L_195 = 0.083HL_9DFE_060:HL_4V9F_073 = 0.1627HL_9DFE_060:HL_8P9A_174 = 0.1961HL_9DFE_060:HL_3DIL_003 = 0.6472HL_5J7L_195:HL_7A0S_006 = 0.5987HL_5J7L_195:HL_9DFE_005 = 0.5813HL_5J7L_195:HL_5J7L_139 = 0.5828HL_5J7L_195:HL_4WF9_006 = 0.5867HL_5J7L_195:HL_4V9F_006 = 0.5758HL_5J7L_195:HL_8P9A_113 = 0.5576HL_5J7L_195:HL_4WF9_058 = 0.1395HL_5J7L_195:HL_7A0S_061 = 0.1908HL_5J7L_195:HL_9DFE_060 = 0.083HL_5J7L_195:HL_5J7L_195 = 0HL_5J7L_195:HL_4V9F_073 = 0.1571HL_5J7L_195:HL_8P9A_174 = 0.155HL_5J7L_195:HL_3DIL_003 = 0.6294HL_4V9F_073:HL_7A0S_006 = 0.6345HL_4V9F_073:HL_9DFE_005 = 0.6211HL_4V9F_073:HL_5J7L_139 = 0.6245HL_4V9F_073:HL_4WF9_006 = 0.6351HL_4V9F_073:HL_4V9F_006 = 0.6181HL_4V9F_073:HL_8P9A_113 = 0.6065HL_4V9F_073:HL_4WF9_058 = 0.1826HL_4V9F_073:HL_7A0S_061 = 0.189HL_4V9F_073:HL_9DFE_060 = 0.1627HL_4V9F_073:HL_5J7L_195 = 0.1571HL_4V9F_073:HL_4V9F_073 = 0HL_4V9F_073:HL_8P9A_174 = 0.1983HL_4V9F_073:HL_3DIL_003 = 0.6859HL_8P9A_174:HL_7A0S_006 = 0.6181HL_8P9A_174:HL_9DFE_005 = 0.6032HL_8P9A_174:HL_5J7L_139 = 0.6033HL_8P9A_174:HL_4WF9_006 = 0.6085HL_8P9A_174:HL_4V9F_006 = 0.6051HL_8P9A_174:HL_8P9A_113 = 0.587HL_8P9A_174:HL_4WF9_058 = 0.1992HL_8P9A_174:HL_7A0S_061 = 0.2304HL_8P9A_174:HL_9DFE_060 = 0.1961HL_8P9A_174:HL_5J7L_195 = 0.155HL_8P9A_174:HL_4V9F_073 = 0.1983HL_8P9A_174:HL_8P9A_174 = 0HL_8P9A_174:HL_3DIL_003 = 0.5832HL_3DIL_003:HL_7A0S_006 = 0.6176HL_3DIL_003:HL_9DFE_005 = 0.6018HL_3DIL_003:HL_5J7L_139 = 0.5994HL_3DIL_003:HL_4WF9_006 = 0.5982HL_3DIL_003:HL_4V9F_006 = 0.64HL_3DIL_003:HL_8P9A_113 = 0.593HL_3DIL_003:HL_4WF9_058 = 0.6517HL_3DIL_003:HL_7A0S_061 = 0.6698HL_3DIL_003:HL_9DFE_060 = 0.6472HL_3DIL_003:HL_5J7L_195 = 0.6294HL_3DIL_003:HL_4V9F_073 = 0.6859HL_3DIL_003:HL_8P9A_174 = 0.5832HL_3DIL_003:HL_3DIL_003 = 0HL_7A0S_006HL_9DFE_005HL_5J7L_139HL_4WF9_006HL_4V9F_006HL_8P9A_113HL_4WF9_058HL_7A0S_061HL_9DFE_060HL_5J7L_195HL_4V9F_073HL_8P9A_174HL_3DIL_003Discrepancy0.000.100.200.300.400.500.60
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