Motif HL_30068.1 Version HL_30068.1 of this group appears in releases 3.91 to 3.94
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | 2-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_7A0S_006 | 7A0S | 0.1016 | 2 | X | LSU rRNA | G | 171 | A | 172 | A | 174 | C | 175 | U | 177 | C | 178 | cWW | ntSH | |
| 2 | HL_9DFE_005 | 9DFE | 0.0665 | 2 | 1A | LSU rRNA | G | 194 | A | 195 | A | 197 | C | 198 | U | 200 | C | 201 | cWW | ntSH | |
| 3 | HL_5J7L_139 | 5J7L | 0.0000 | 2 | DA | LSU rRNA | G | 194 | A | 195 | A | 197 | C | 198 | U | 200 | C | 201 | cWW | ntSH | |
| 4 | HL_4WF9_006 | 4WF9 | 0.0687 | 2 | X | LSU rRNA | G | 197 | A | 198 | A | 200 | C | 201 | U | 203 | C | 204 | cWW | tSH | |
| 5 | HL_4V9F_006 | 4V9F | 0.0990 | 2 | 0 | LSU rRNA | G | 164 | A | 165 | A | 167 | C | 168 | U | 170 | C | 171 | cWW | tSH | |
| 6 | HL_8P9A_113 | 8P9A | 0.1168 | 2 | AR | LSU rRNA | U | 38 | A | 39 | G | 41 | C | 42 | U | 44 | A | 45 | cWW | tSH | |
| 7 | HL_4WF9_058 | 4WF9 | 0.5716 | 1 | X | LSU rRNA | C | 2578 | U | 2579 | G | 2580 | U | 2581 | C | 2583 | G | 2584 | cWW | ||
| 8 | HL_7A0S_061 | 7A0S | 0.6171 | 1 | X | LSU rRNA | C | 2530 | U | 2531 | G | 2532 | U | 2533 | C | 2535 | G | 2536 | cWW | ||
| 9 | HL_9DFE_060 | 9DFE | 0.5919 | 1 | 1A | LSU rRNA | C | 2551 | OMU | 2552 | G | 2553 | U | 2554 | C | 2556 | G | 2557 | cWW | ||
| 10 | HL_5J7L_195 | 5J7L | 0.5828 | 1 | DA | LSU rRNA | C | 2551 | OMU | 2552 | G | 2553 | U | 2554 | C | 2556 | G | 2557 | cWW | ||
| 11 | HL_4V9F_073 | 4V9F | 0.6245 | 1 | 0 | LSU rRNA | U | 2586 | OMU | 2587 | OMG | 2588 | U | 2589 | C | 2591 | G | 2592 | cWWa | ||
| 12 | HL_8P9A_174 | 8P9A | 0.6033 | 1 | AR | LSU rRNA | U | 2920 | U | 2921 | G | 2922 | U | 2923 | C | 2925 | A | 2926 | cWW | ||
| 13 | HL_3DIL_003 | 3DIL | 0.5994 | 1 | GNRA | A | RNA (174-MER) | G | 124 | G | 125 | A | 126 | A | 127 | A | 129 | C | 130 | cWW | tSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAAACAUC | 5 |
| CUGUUCG | 2 |
| UAAGCAUA | 1 |
| C(OMU)GUUCG | 1 |
| CGUUCG | 1 |
| U(OMU)(OMG)UUCG | 1 |
| UUGUUCA | 1 |
| GGAAUAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAACAU | 5 |
| UGUUC | 3 |
| (OMU)GUUC | 2 |
| AAGCAU | 1 |
| (OMU)(OMG)UUC | 1 |
| GAAUA | 1 |
- Annotations
-
- (12)
- GNRA (1)
- Basepair signature
- cWW-F-F-F-F
- Heat map statistics
- Min 0.07 | Avg 0.39 | Max 0.69
Coloring options: