Motif HL_31581.5 Version HL_31581.5 of this group appears in releases 3.77 to 3.88
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 1-11 | 8-9 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4PR6_002 | 4PR6 | 0.0739 | 1 | B | HDV RIBOZYME SELF-CLEAVED | C | 147 | A | 148 | U | 149 | U | 150 | G | 151 | A | 153 | C | 154 | U | 155 | C | 156 | C | 157 | G | 158 | cWW | cSH | |
| 2 | HL_4PRF_002 | 4PRF | 0.0000 | 1 | B | Hepatitis Delta virus ribozyme | C | 147 | A | 148 | U | 149 | U | 150 | G | 151 | A | 153 | C | 154 | U | 155 | C | 156 | C | 157 | G | 158 | cWW | cSH | |
| 3 | HL_1M5K_002 | 1M5K | 0.1622 | 1 | U1 small nuclear ribonucleoprotein A binding hairpin | B | RNA HAIRPIN RIBOZYME | C | 35 | A | 36 | U | 37 | U | 38 | G | 39 | A | 41 | C | 42 | U | 43 | C | 44 | C | 45 | G | 46 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAUUGCACUCCG | 3 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUUGCACUCC | 3 |
Release history
| Release | 3.77 | 3.78 | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 | 3.88 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2023-12-06 | 2024-01-03 | 2024-01-03 | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 | 2024-08-14 | 2024-09-11 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- U1 small nuclear ribonucleoprotein A binding hairpin (1)
- Basepair signature
- cWW-F-F-F-cSH-F-F-F-F
- Heat map statistics
- Min 0.07 | Avg 0.09 | Max 0.17
Coloring options: