Motif HL_38927.1 Version HL_38927.1 of this group appears in releases 3.77 to 3.79
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 1-3 | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_6CZR_089 | 6CZR | 0.2769 | 2 | Mini UNCG | 1a | SSU rRNA | G | 822 | C | 824 | C | 826 | cWW |
| 2 | HL_6MSF_001 | 6MSF | 0.1469 | 2 | Mini UNCG | R | RNA (14-mer) | G | 6||||P_1 | C | 8||||P_1 | C | 10||||P_1 | cWW |
| 3 | HL_6MSF_002 | 6MSF | 0.1689 | 2 | Mini UNCG | S | RNA (10-mer) | G | 6||||P_1 | C | 8||||P_1 | C | 10||||P_1 | cWW |
| 4 | HL_5J7L_204 | 5J7L | 0.1447 | 2 | Mini UNCG | DB | 5S rRNA | G | 86 | C | 88 | C | 90 | cWW |
| 5 | HL_6JOO_002 | 6JOO | 0.2025 | 1 | Mini UNCG | B | Guide RNA | C | 58 | C | 60 | G | 61 | cWW |
| 6 | HL_8DP3_002 | 8DP3 | 0.0000 | 2 | Mini UNCG | R | Enterovirus 5' cloverleaf cis-acting replication element | C | 39 | U | 41 | G | 43 | cWW |
| 7 | HL_5DH6_001 | 5DH6 | 0.1845 | 3 | Mini UNCG | A | Hammerhead ribozyme (type III) | C | 16 | U | 20 | G | 21 | cWW |
| 8 | HL_2QUW_002 | 2QUW | 0.2173 | 3 | Mini UNCG | B | Hammerhead ribozyme, cleaved fragment | C | 32 | U | 36 | G | 37 | cWW |
| 9 | HL_2QUS_002 | 2QUS | 0.2110 | 3 | Mini UNCG | A | Hammerhead ribozyme | C | 32 | U | 36 | G | 37 | cWW |
| 10 | HL_5TBW_040 | 5TBW | 0.1973 | 2 | Mini UNCG | 1 | LSU rRNA | C | 1792 | U | 1795 | G | 1796 | cWW |
| 11 | HL_2F8K_001 | 2F8K | 0.2307 | 1 | Mini UNCG | B | RNA (16-mer) | U | 6 | G | 8 | A | 9 | cWW |
| 12 | HL_5F9R_002 | 5F9R | 0.2611 | 1 | Mini UNCG | A | tracrRNA | C | 73 | A | 75 | G | 76 | cWW |
| 13 | HL_7A0S_039 | 7A0S | 0.3097 | 1 | Mini UNCG | X | LSU rRNA | C | 1581 | A | 1583 | G | 1584 | cWW |
| 14 | HL_5J7L_172 | 5J7L | 0.3049 | 1 | Mini UNCG | DA | LSU rRNA | C | 1565 | G | 1567 | G | 1568 | cWW |
| 15 | HL_7RQB_039 | 7RQB | 0.2569 | 1 | Mini UNCG (H) | 1A | LSU rRNA | C | 1565 | A | 1567 | G | 1568 | cWW |
| 16 | HL_7ZO1_002 | 7ZO1 | 0.2405 | 1 | Mini UNCG | A | tracrRNA | C | 55 | A | 57 | G | 58 | cWW |
| 17 | HL_7QQP_002 | 7QQP | 0.2106 | 1 | Mini UNCG | A | tracrRNA | C | 55 | A | 57 | G | 58 | cWW |
| 18 | HL_5VW1_002 | 5VW1 | 0.2050 | 1 | Mini UNCG | C | tracrRNA | C | 55 | A | 57 | G | 58 | cWW |
| 19 | HL_5FQ5_002 | 5FQ5 | 0.2121 | 1 | Mini UNCG | A | tracrRNA | C | 55 | A | 57 | G | 58 | cWW |
| 20 | HL_7QQX_002 | 7QQX | 0.2123 | 1 | Mini UNCG | A | tracrRNA | C | 55 | A | 57 | G | 58 | cWW |
| 21 | HL_7QR0_002 | 7QR0 | 0.2076 | 1 | Mini UNCG | A | tracrRNA | C | 55 | A | 57 | G | 58 | cWW |
| 22 | HL_5B2T_002 | 5B2T | 0.2116 | 1 | Mini UNCG | A | tracrRNA | C | 55 | A | 57 | G | 58 | cWW |
| 23 | HL_4ZT0_005 | 4ZT0 | 0.2079 | 1 | Mini UNCG | D | tracrRNA | C | 55 | A | 57 | G | 58 | cWW |
| 24 | HL_7QR8_002 | 7QR8 | 0.1847 | 1 | Mini UNCG | A | tracrRNA | C | 55 | A | 57 | G | 58 | cWW |
| 25 | HL_2OEU_001 | 2OEU | 0.2329 | 3 | Mini UNCG | A | Hammerhead Ribozyme | C | 15 | U | 19 | G | 20 | cWW |
| 26 | HL_4LFB_018 | 4LFB | 0.2618 | 2 | Mini UNCG | A | SSU rRNA | G | 838 | C | 840 | C | 848 | ncWW |
| 27 | HL_4KR9_001 | 4KR9 | 0.3580 | 3 | Mini UNCG | M | RNA (39-MER) | G | 10 | U | 13 | C | 15 | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUAG | 10 |
| CUGAUG | 4 |
| GUCUC | 3 |
| GUCAC | 2 |
| CAAG | 2 |
| CUCG | 1 |
| CAUUG | 1 |
| CCGUG | 1 |
| UUGA | 1 |
| CAGG | 1 |
| GUGUCC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UA | 10 |
| UGAU | 4 |
| UCU | 3 |
| UCA | 2 |
| AA | 2 |
| UC | 1 |
| AUU | 1 |
| CGU | 1 |
| UG | 1 |
| AG | 1 |
| UGUC | 1 |
- Annotations
-
- Mini UNCG (26)
- Mini UNCG (H) (1)
- Basepair signature
- cWW-F
- Heat map statistics
- Min 0.02 | Avg 0.20 | Max 0.95
Coloring options: