Motif HL_43613.1 Version HL_43613.1 of this group appears in releases 3.2 to 3.2
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | 3-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4WF9_043 | 4WF9 | 0.4342 | 4 | X | LSU rRNA | U | 1804 | U | 1805 | U | 1806 | A | 1810 | A | 1811 | A | 1812 | A | 1814 | cWW | tWH | |
| 2 | HL_4V8P_128 | 4V8P | 0.4092 | 4 | D1 | LSU rRNA | U | 2131 | U | 2132 | U | 2133 | A | 2137 | A | 2138 | A | 2139 | A | 2141 | cWW | tWH | |
| 3 | HL_4Y4O_147 | 4Y4O | 0.0646 | 4 | 2A | LSU rRNA | U | 1777 | U | 1778 | U | 1779 | A | 1783 | A | 1784 | A | 1785 | A | 1787 | cWW | tWH | tWH |
| 4 | HL_5J7L_178 | 5J7L | 0.0000 | 4 | DA | LSU rRNA | U | 1777 | U | 1778 | U | 1779 | A | 1783 | A | 1784 | A | 1785 | A | 1787 | cWW | tWH | tWH |
| 5 | HL_4V9F_047 | 4V9F | 0.1162 | 4 | 0 | LSU rRNA | U | 1833 | C | 1834 | U | 1835 | A | 1839 | A | 1840 | C | 1841 | A | 1843 | cWW | tWH | tWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUUAUCAAAAA | 1 |
| UUUAAUAAAAA | 1 |
| UUUACCAAAAA | 1 |
| UUUAUUAAAAA | 1 |
| UCUAGUAACAA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUAUCAAAA | 1 |
| UUAAUAAAA | 1 |
| UUACCAAAA | 1 |
| UUAUUAAAA | 1 |
| CUAGUAACA | 1 |
Release history
| Release | 3.2 |
|---|---|
| Date | 2018-09-26 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (5)
- Basepair signature
- cWW-tWH-tWH-R
- Heat map statistics
- Min 0.06 | Avg 0.24 | Max 0.46
Coloring options: