Motif HL_46175.2 Version HL_46175.2 of this group appears in releases 1.5 to 1.13
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-9 | 3-7 | 3-8 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3U5F_021 | 3U5F | 0.4616 | 0 | 6 | A | 900 | G | 901 | G | 902 | U | 903 | G | 904 | A | 905 | A | 906 | A | 907 | U | 908 | U | 909 | cWW | ntSH | ||
| 2 | HL_4BPP_020 | 4BPP | 0.4665 | 0 | A | A | 878 | G | 879 | G | 880 | U | 881 | G | 882 | A | 883 | A | 884 | A | 885 | U | 886 | U | 887 | cWW | tSH | ||
| 3 | HL_1FJG_015 | 1FJG | 0.3460 | 0 | A | C | 689 | G | 690 | G | 691 | U | 692 | G | 693 | A | 694 | A | 695 | A | 696 | U | 697 | G | 698 | cWW | tSH | tSH | |
| 4 | HL_2AW7_015 | 2AW7 | 0.3255 | 0 | A | C | 689 | G | 690 | G | 691 | U | 692 | G | 693 | A | 694 | A | 695 | A | 696 | U | 697 | G | 698 | cWW | tSH | tSH | |
| 5 | HL_4A1C_004 | 4A1C | 0.4039 | 0 | 2 | G | 121 | U | 122 | G | 123 | U | 124 | A | 125 | A | 126 | A | 127 | A | 128 | A | 129 | C | 130 | cWW | ncWW | ntSH | |
| 6 | HL_4BPP_022 | 4BPP | 0.0000 | 1 | A | G | 975 | A | 976 | U | 977 | C | 978 | A | 979 | G | 980 | A | 981 | A | 983 | C | 984 | C | 985 | cWW | |||
| 7 | HL_1FJG_017 | 1FJG | 0.1180 | 1 | A | G | 786 | A | 787 | U | 788 | U | 789 | A | 790 | G | 791 | A | 792 | A | 794 | C | 795 | C | 796 | cWW | |||
| 8 | HL_2AW7_017 | 2AW7 | 0.1451 | 1 | A | G | 786 | A | 787 | U | 788 | U | 789 | A | 790 | G | 791 | A | 792 | A | 794 | C | 795 | C | 796 | cWW | |||
| 9 | HL_3U5F_023 | 3U5F | 0.3374 | 1 | 6 | G | 997 | A | 998 | U | 999 | C | 1000 | A | 1001 | G | 1002 | A | 1003 | A | 1005 | C | 1006 | C | 1007 | cWW | |||
| 10 | HL_1P6V_002 | 1P6V | 0.7708 | 1 | B | G | 44 | G | 45 | U | 46 | U | 47 | C | 48 | G | 49 | A | 50 | U | 52 | C | 53 | C | 54 | cWW | cWW | ntWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AGGUGAAAUU | 2 |
| CGGUGAAAUG | 2 |
| GAUCAGAUACC | 2 |
| GAUUAGAUACC | 2 |
| GUGUAAAAAC | 1 |
| GGUUCGAUUCC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GGUGAAAU | 4 |
| AUCAGAUAC | 2 |
| AUUAGAUAC | 2 |
| UGUAAAAA | 1 |
| GUUCGAUUC | 1 |
Release history
| Release | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 |
|---|---|---|---|---|---|---|---|---|---|
| Date | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-04 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 |
| Status | Updated, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_46175.2 | Only in the parent motif |
|---|---|---|---|
| HL_46175.1 Compare | HL_1FJG_017, HL_1FJG_015, HL_4A1C_004, HL_3U5F_023, HL_3U5F_021, HL_2AW7_017, HL_2AW7_015 | HL_1P6V_002, HL_4BPP_020, HL_4BPP_022 | HL_3R9X_001, HL_2XZM_019, HL_2XZM_021 |
| HL_12984.1 Compare | HL_1P6V_002 | HL_4BPP_020, HL_4BPP_022, HL_1FJG_017, HL_1FJG_015, HL_4A1C_004, HL_3U5F_023, HL_3U5F_021, HL_2AW7_017, HL_2AW7_015 |
Children motifs
| Child motif | Common motif instances | Only in HL_46175.2 | Only in the child motif |
|---|---|---|---|
| HL_46175.3 Compare | HL_1P6V_002, HL_4BPP_020, HL_4BPP_022, HL_1FJG_017, HL_1FJG_015, HL_4A1C_004, HL_3U5F_023, HL_3U5F_021, HL_2AW7_017, HL_2AW7_015 | HL_1VW3_013 |
- Annotations
-
- (10)
- Basepair signature
- cWW-R-tSH-R-R-R-R
- Heat map statistics
- Min 0.08 | Avg 0.42 | Max 0.96
Coloring options: