Motif HL_48507.1 Version HL_48507.1 of this group appears in releases 1.16 to 1.16
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | 2-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4NVV_020 | 4NVV | 0.9454 | 1 | A | 23S Ribosomal RNA | C | 666 | G | 667 | A | 668 | A | 669 | A | 671 | G | 672 | cWW | ntSW |
| 2 | HL_3DIR_003 | 3DIR | 0.7529 | 1 | A | RNA (174-MER) | G | 124 | G | 125 | A | 126 | A | 127 | A | 129 | C | 130 | cWW | ntSH |
| 3 | HL_2QBG_022 | 2QBG | 0.7670 | 1 | B | 23S rRNA | U | 641 | U | 642 | A | 643 | A | 644 | U | 646 | G | 647 | cWW | |
| 4 | HL_4A1B_001 | 4A1B | 0.1685 | 2 | 1 | 26S RRNA | U | 36 | A | 37 | G | 39 | C | 40 | U | 42 | A | 43 | cWW | ntSH |
| 5 | HL_4CUV_001 | 4CUV | 0.1400 | 2 | 1 | 25S RRNA | U | 38 | A | 39 | G | 41 | C | 42 | U | 44 | A | 45 | cWW | ntSH |
| 6 | HL_3U5H_001 | 3U5H | 0.0735 | 2 | 5 | 25S rRNA | U | 38 | A | 39 | G | 41 | C | 42 | U | 44 | A | 45 | cWW | tSH |
| 7 | HL_1VX6_001 | 1VX6 | 0.0000 | 2 | A | 28S ribosomal RNA | U | 38 | A | 39 | G | 41 | C | 42 | U | 44 | A | 45 | cWW | ntSH |
| 8 | HL_2QBG_008 | 2QBG | 0.1375 | 2 | B | 23S rRNA | G | 194 | A | 195 | A | 197 | C | 198 | U | 200 | C | 201 | cWW | ntSH |
| 9 | HL_4NVV_005 | 4NVV | 0.1451 | 2 | A | 23S Ribosomal RNA | G | 183 | A | 184 | A | 186 | C | 187 | U | 189 | C | 190 | cWW | tSH |
| 10 | HL_4IOA_006 | 4IOA | 0.1837 | 2 | X | LSU rRNA | G | 171 | A | 172 | A | 174 | C | 175 | U | 177 | C | 178 | cWW | ntSH |
| 11 | HL_1S72_006 | 1S72 | 0.1394 | 2 | 0 | LSU rRNA | G | 164 | A | 165 | A | 167 | C | 168 | U | 170 | C | 171 | cWW | tSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UAAGCAUA | 4 |
| GAAACAUC | 4 |
| CGAACAG | 1 |
| GGAAUAC | 1 |
| UUAACUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAGCAU | 4 |
| AAACAU | 4 |
| GAACA | 1 |
| GAAUA | 1 |
| UAACU | 1 |
Release history
| Release | 1.16 |
|---|---|
| Date | 2014-07-26 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in HL_48507.1 | Only in the parent motif |
|---|---|---|---|
| HL_92565.1 Compare | HL_4A1B_001, HL_3DIR_003, HL_2QBG_008, HL_4NVV_005, HL_4CUV_001, HL_1S72_006, HL_4IOA_006, HL_3U5H_001 | HL_4NVV_020, HL_2QBG_022, HL_1VX6_001 | HL_1VW3_053, HL_4CUV_064, HL_1VW3_004, HL_4A1B_063, HL_2QBG_064, HL_4NVV_060, HL_3U5H_064, HL_4IOA_061 |
| HL_49036.5 Compare | HL_4NVV_020, HL_2QBG_022 | HL_4A1B_001, HL_3DIR_003, HL_2QBG_008, HL_4NVV_005, HL_1VX6_001, HL_4CUV_001, HL_1S72_006, HL_4IOA_006, HL_3U5H_001 | HL_1S72_022, HL_4AL5_001, HL_4CUV_042, HL_3D0U_003, HL_2QBG_043, HL_1XJR_001, HL_3U5H_042, HL_3Q1Q_010, HL_4A1B_041, HL_4BPP_030, HL_1S72_016 |
Children motifs
| Child motif | Common motif instances | Only in HL_48507.1 | Only in the child motif |
|---|---|---|---|
| HL_48507.2 Compare | HL_4A1B_001, HL_2QBG_022, HL_3DIR_003, HL_2QBG_008, HL_1VX6_001, HL_4CUV_001, HL_1S72_006, HL_4IOA_006, HL_3U5H_001 | HL_4NVV_020, HL_4NVV_005 | HL_4QCN_020, HL_4QCN_005 |
- Annotations
-
- (11)
- Basepair signature
- cWW-tSH-R-R
- Heat map statistics
- Min 0.07 | Avg 0.44 | Max 0.98
Coloring options: