Motif HL_50537.6 Version HL_50537.6 of this group appears in releases 3.89 to 3.94
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 1-5 | 2-4 | 2-5 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_6MJ0_007 | 6MJ0 | 0.7443 | 3 | D-loop related | B | tRNA-like 3' UTR element | C | 32 | C | 33 | U | 36 | U | 37 | G | 39 | cWW | ||
| 2 | HL_1IL2_002 | 1IL2 | 0.3422 | 4 | C | tRNA | C | 931 | PSU | 932 | U | 935 | C | 938 | G | 939 | cWW | |||
| 3 | HL_4WJ4_002 | 4WJ4 | 0.0000 | 4 | B | tRNA | A | 31 | C | 32 | U | 35 | A | 38 | U | 39 | cWW | ncWW | ||
| 4 | HL_3KFU_005 | 3KFU | 0.2747 | 4 | L | tRNA | G | 31 | C | 32 | U | 35 | A | 38 | C | 39 | cWW | cWW | ncWw |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCAGUUAG | 1 |
| CUGUCCG | 1 |
| ACUGUUAAU | 1 |
| GCUGUUAAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CUGUUAA | 2 |
| CAGUUA | 1 |
| (PSU)UGUC(1MG)C | 1 |
- Annotations
-
- (3)
- D-loop related (1)
- Basepair signature
- cWW-F-F-F
- Heat map statistics
- Min 0.27 | Avg 0.42 | Max 0.79
Coloring options: