Motif HL_50537.6 Version HL_50537.6 of this group appears in releases 3.89 to 3.98

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5	1-5	2-4	2-5
1	HL_3KFU_005	3KFU	0.2747	4		L	tRNA	G	31	C	32	U	35	A	38	C	39	cWW	cWW	ncWw
2	HL_4WJ4_002	4WJ4	0.0000	4		B	tRNA	A	31	C	32	U	35	A	38	U	39	cWW	ncWW
3	HL_1IL2_002	1IL2	0.3422	4		C	tRNA	C	931	PSU	932	U	935	C	938	G	939	cWW
4	HL_6MJ0_007	6MJ0	0.7443	3	D-loop related	B	tRNA-like 3' UTR element	C	32	C	33	U	36	U	37	G	39	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GCUGUUAAC	1
ACUGUUAAU	1
CUGUCCG	1
CCAGUUAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
CUGUUAA	2
(PSU)UGUC(1MG)C	1
CAGUUA	1

Release history

Release	3.89	3.90	3.91	3.92	3.93	3.94	3.95	3.96	3.97	3.98
Date	2024-10-09	2024-11-06	2024-12-04	2025-01-01	2025-01-29	2025-02-26	2025-03-26	2025-04-23	2025-05-21	2025-06-18
Status	Updated, 2 parents	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (3)
D-loop related (1)
Basepair signature: cWW-F-F-F
Heat map statistics: Min 0.27 | Avg 0.42 | Max 0.79

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