Motif HL_54035.5 Version HL_54035.5 of this group appears in releases 3.26 to 3.53
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5TBW_038 | 5TBW | 0.6307 | 0 | 1 | LSU rRNA | G | 1719 | U | 1720 | U | 1721 | U | 1722 | A | 1723 | U | 1724 | C | 1725 | cWW | cwW | |
| 2 | HL_4V88_215 | 4V88 | 0.3143 | 1 | T-loop related (H) | A6 | SSU rRNA | C | 1309 | U | 1310 | U | 1311 | A | 1312 | A | 1313 | U | 1315 | G | 1316 | cWW | cwW |
| 3 | HL_5TBW_024 | 5TBW | 0.2659 | 1 | 1 | LSU rRNA | C | 1076 | U | 1077 | U | 1078 | A | 1079 | A | 1080 | U | 1082 | G | 1083 | cWW | cwW | |
| 4 | HL_5TBW_008 | 5TBW | 0.2443 | 3 | 1 | LSU rRNA | U | 278 | U | 279 | U | 280 | G | 281 | G | 282 | U | 286 | G | 287 | cWW | cwW | |
| 5 | HL_3R4F_003 | 3R4F | 0.0000 | 1 | A | pRNA | A | 24||||15_545 | U | 25||||15_545 | U | 26||||15_545 | G | 27||||15_545 | A | 28||||15_545 | U | 30||||15_545 | U | 31||||15_545 | cWW | cwW | |
| 6 | HL_3R4F_001 | 3R4F | 0.0000 | 1 | T-loop related | A | pRNA | A | 24 | U | 25 | U | 26 | G | 27 | A | 28 | U | 30 | U | 31 | cWW | cwW |
| 7 | HL_5J7L_024 | 5J7L | 0.2272 | 1 | T-loop related | AA | SSU rRNA | G | 1089 | U | 1090 | U | 1091 | A | 1092 | A | 1093 | U | 1095 | C | 1096 | cWW | cwW |
| 8 | HL_4LFB_025 | 4LFB | 0.2565 | 1 | T-loop related | A | SSU rRNA | G | 1089 | U | 1090 | U | 1091 | A | 1092 | A | 1093 | U | 1095 | C | 1096 | cWW | cwW |
| 9 | HL_6CZR_096 | 6CZR | 0.3528 | 1 | T-loop related | 1a | SSU rRNA | G | 1072 | U | 1073 | U | 1074 | A | 1075 | A | 1076 | U | 1078 | C | 1079 | cWW | cwW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUUAAGUC | 3 |
| CUUAAUUG | 2 |
| AUUGAGUU | 2 |
| GUUUAUC | 1 |
| UUUGGGAAUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUAAGU | 3 |
| UUAAUU | 2 |
| UUGAGU | 2 |
| UUUAU | 1 |
| UUGGGAAU | 1 |
Release history
| Release | 3.26 | 3.27 | 3.28 | 3.29 | 3.30 | 3.31 | 3.32 | 3.33 | 3.34 | 3.35 | 3.36 | 3.37 | 3.38 | 3.39 | 3.40 | 3.41 | 3.42 | 3.43 | 3.44 | 3.45 | 3.46 | 3.47 | 3.48 | 3.49 | 3.50 | 3.51 | 3.52 | 3.53 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2019-12-11 | 2020-01-08 | 2020-02-05 | 2020-03-04 | 2020-04-01 | 2020-04-29 | 2020-05-27 | 2020-06-24 | 2020-07-22 | 2020-08-19 | 2020-09-16 | 2020-10-14 | 2020-11-11 | 2020-12-09 | 2021-01-06 | 2021-02-03 | 2021-03-03 | 2021-03-31 | 2021-04-28 | 2021-05-26 | 2021-06-23 | 2021-07-21 | 2021-08-18 | 2021-09-15 | 2021-10-13 | 2021-11-10 | 2021-12-08 | 2022-01-05 |
| Status | Updated, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- T-loop related (4)
- (4)
- T-loop related (H) (1)
- Basepair signature
- cWW-cWW-R-R
- Heat map statistics
- Min 0.09 | Avg 0.33 | Max 0.83
Coloring options: