Motif HL_56677.3 Version HL_56677.3 of this group appears in releases 3.12 to 3.47
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 1-13 | 2-10 | 2-12 | 3-11 | 4-9 | 5-8 | 6-7 | 10-12 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5TBW_067 | 5TBW | 0.1328 | 2 | 1 | LSU rRNA | C | 3110 | U | 3111 | G | 3112 | A | 3113 | A | 3114 | C | 3115 | C | 3117 | C | 3118 | U | 3119 | U | 3121 | A | 3122 | A | 3123 | G | 3124 | cWW | tWH | ntSH | tSH | tHW | tHW | ntSW | cWH | |
| 2 | HL_4WF9_062 | 4WF9 | 0.1066 | 2 | X | LSU rRNA | C | 2772 | U | 2773 | G | 2774 | A | 2775 | A | 2776 | A | 2777 | C | 2779 | A | 2780 | U | 2781 | U | 2783 | A | 2784 | A | 2785 | G | 2786 | cWW | tWH | tSH | tHW | tHW | ntSW | ncWH | ||
| 3 | HL_4V9F_068 | 4V9F | 0.1010 | 2 | 0 | LSU rRNA | C | 2780 | U | 2781 | G | 2782 | A | 2783 | A | 2784 | C | 2785 | C | 2787 | A | 2788 | U | 2789 | U | 2791 | A | 2792 | A | 2793 | G | 2794 | cWW | tWH | ntSH | tSH | tHW | tHW | tSW | cWH | |
| 4 | HL_5J7L_199 | 5J7L | 0.0000 | 2 | DA | LSU rRNA | C | 2745 | U | 2746 | G | 2747 | A | 2748 | A | 2749 | A | 2750 | C | 2752 | A | 2753 | U | 2754 | U | 2756 | A | 2757 | A | 2758 | G | 2759 | cWW | tWH | ntSH | tSH | tHW | tHW | tSW | cWH | |
| 5 | HL_4Y4O_169 | 4Y4O | 0.1073 | 2 | 2A | LSU rRNA | C | 2745 | U | 2746 | G | 2747 | A | 2748 | A | 2749 | A | 2750 | C | 2752 | A | 2753 | U | 2754 | U | 2756 | A | 2757 | A | 2758 | G | 2759 | cWW | tWH | ntSH | tSH | tHW | tHW | ntSW | cWH | |
| 6 | HL_4IOA_065 | 4IOA | 0.1248 | 2 | X | LSU rRNA | C | 2725 | U | 2726 | G | 2727 | A | 2728 | A | 2729 | A | 2730 | C | 2732 | A | 2733 | U | 2734 | U | 2736 | A | 2737 | A | 2738 | G | 2739 | cWW | tWH | ntSH | tHW | tHW | ntSW | cWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUGAAAGCAUCUAAG | 4 |
| CUGAACGCCUCUAAG | 1 |
| CUGAACGCAUCUAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGAAAGCAUCUAA | 4 |
| UGAACGCCUCUAA | 1 |
| UGAACGCAUCUAA | 1 |
Release history
| Release | 3.12 | 3.13 | 3.14 | 3.15 | 3.16 | 3.17 | 3.18 | 3.19 | 3.20 | 3.21 | 3.22 | 3.23 | 3.24 | 3.25 | 3.26 | 3.27 | 3.28 | 3.29 | 3.30 | 3.31 | 3.32 | 3.33 | 3.34 | 3.35 | 3.36 | 3.37 | 3.38 | 3.39 | 3.40 | 3.41 | 3.42 | 3.43 | 3.44 | 3.45 | 3.46 | 3.47 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-11-16 | 2018-12-14 | 2019-01-11 | 2019-02-08 | 2019-03-08 | 2019-04-05 | 2019-05-03 | 2019-05-31 | 2019-06-28 | 2019-07-26 | 2019-08-23 | 2019-09-19 | 2019-10-16 | 2019-11-13 | 2019-12-11 | 2020-01-08 | 2020-02-05 | 2020-03-04 | 2020-04-01 | 2020-04-29 | 2020-05-27 | 2020-06-24 | 2020-07-22 | 2020-08-19 | 2020-09-16 | 2020-10-14 | 2020-11-11 | 2020-12-09 | 2021-01-06 | 2021-02-03 | 2021-03-03 | 2021-03-31 | 2021-04-28 | 2021-05-26 | 2021-06-23 | 2021-07-21 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
- Basepair signature
- cWW-tSH-cWH-tSH-tWH-tHW-tHW-tSW
- Heat map statistics
- Min 0.10 | Avg 0.11 | Max 0.15
Coloring options: