Motif HL_79793.1 Version HL_79793.1 of this group appears in releases 0.1 to 0.1
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1OOA_002 | 1OOA | 0.8547 | 0 | D | RNA aptamer | U | 13 | G | 14 | U | 15 | A | 16 | A | 17 | G | 18 | cWW | ncSW | ||
| 2 | HL_1MMS_002 | 1MMS | 0.0001 | 2 | GNRA wlth tandem sheared | C | 23S RIBOSOMAL RNA | C | 1092 | G | 1093 | U | 1094 | C | 1097 | A | 1098 | G | 1099 | cWW | tSH | ntSHa |
| 3 | HL_1QA6_002 | 1QA6 | 0.0000 | 2 | C | 58 NUCLEOTIDE RIBOSOMAL RNA DOMAIN | C | 142 | G | 143 | U | 144 | U | 147 | A | 148 | G | 149 | cWW | tSH | ||
| 4 | HL_1MMS_004 | 1MMS | 0.1309 | 2 | D | 23S RIBOSOMAL RNA | C | 1092 | G | 1093 | U | 1094 | C | 1097 | A | 1098 | G | 1099 | cWW | tSH | ntSHa | |
| 5 | HL_1QA6_004 | 1QA6 | 0.1485 | 2 | D | 58 NUCLEOTIDE RIBOSOMAL RNA DOMAIN | C | 142 | G | 143 | U | 144 | U | 147 | A | 148 | G | 149 | cWW | tSH | ||
| 6 | HL_1S72_031 | 1S72 | 0.1791 | 2 | GNRA wlth tandem sheared (H) | 0 | LSU rRNA | C | 1196 | G | 1197 | U | 1198 | C | 1201 | A | 1202 | G | 1203 | cWW | tSH | ntSHa |
| 7 | HL_2QBG_031 | 2QBG | 0.2327 | 2 | B | 23S rRNA | C | 1092 | G | 1093 | U | 1094 | U | 1097 | A | 1098 | G | 1099 | cWW | tSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGUAACAG | 3 |
| CGUAAUAG | 3 |
| UGUAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUAACA | 3 |
| GUAAUA | 3 |
| GUAA | 1 |
Release history
| Release | 0.1 |
|---|---|
| Date | 2011-12-08 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
| Child motif | Common motif instances | Only in HL_79793.1 | Only in the child motif |
|---|---|---|---|
| HL_81943.1 Compare | HL_1QA6_004, HL_1QA6_002, HL_1S72_031, HL_2QBG_031, HL_1MMS_002, HL_1MMS_004 | HL_1OOA_002 | HL_1QA6_003, HL_1QA6_001, HL_1E8O_001, HL_1NBS_002, HL_2ZJR_029, HL_2ZJR_028, HL_1MMS_003, HL_1MMS_001, HL_3PYO_022 |
| HL_57387.1 Compare | HL_1OOA_002 | HL_1QA6_004, HL_1QA6_002, HL_1S72_031, HL_2QBG_031, HL_1MMS_002, HL_1MMS_004 | HL_3O58_008, HL_2QBG_032, HL_1OOA_001 |
- Annotations
-
- (5)
- GNRA wlth tandem sheared (1)
- GNRA wlth tandem sheared (H) (1)
- Basepair signature
- Heat map statistics
- Min 0.00 | Avg 0.31 | Max 0.90
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