Motif HL_57661.1 Version HL_57661.1 of this group appears in releases 3.2 to 3.2
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | 2-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4V9F_016 | 4V9F | 0.3341 | 1 | GNRA with one bulged base | 0 | LSU rRNA | U | 493 | C | 494 | A | 495 | G | 496 | A | 498 | G | 499 | cWW | ntSH |
| 2 | HL_4V8P_124 | 4V8P | 0.2967 | 1 | GNRA with one bulged base | D1 | LSU rRNA | U | 1886 | U | 1887 | A | 1888 | G | 1889 | A | 1891 | G | 1892 | cWW | ntSH |
| 3 | HL_4WF9_021 | 4WF9 | 0.3286 | 1 | GNRA with one bulged base | X | LSU rRNA | U | 686 | G | 687 | A | 688 | A | 689 | A | 691 | G | 692 | cWW | ntSH |
| 4 | HL_4Y4O_123 | 4Y4O | 0.2222 | 1 | GNRA with one bulged base | 2A | LSU rRNA | C | 641 | G | 642 | A | 643 | A | 644 | A | 646 | G | 647 | cWW | tSH |
| 5 | HL_1XJR_001 | 1XJR | 0.1972 | 1 | GNRA with one bulged base | A | s2m RNA | G | 21 | G | 22 | A | 23 | G | 24 | A | 26 | C | 27 | cWW | tSH |
| 6 | HL_5J7L_174 | 5J7L | 0.0000 | 1 | GNRA with one bulged base | DA | LSU rRNA | A | 1630 | G | 1631 | A | 1632 | G | 1633 | A | 1635 | U | 1636 | cWW | tSH |
| 7 | HL_2XLK_001 | 2XLK | 0.2458 | 1 | GNRA with one bulged base | C | RNA (16-mer) | C | 10 | G | 11 | U | 12 | A | 13 | A | 15 | G | 16 | cWW | tSH |
| 8 | HL_4AL5_001 | 4AL5 | 0.2773 | 1 | GNRA with one bulged base | B | RNA (20-mer) | C | 10 | G | 11 | U | 12 | A | 13 | A | 15 | G | 16 | cWW | tSH |
| 9 | HL_3D0U_003 | 3D0U | 0.4960 | 1 | GNRA with one bulged base | A | Lysine Riboswitch RNA | G | 121 | G | 122 | A | 123 | A | 124 | A | 126 | C | 127 | cWW | tSH |
| 10 | HL_4IOA_045 | 4IOA | 0.5645 | 1 | GNRA with one bulged base | X | LSU rRNA | C | 1797 | G | 1798 | A | 1799 | A | 1800 | A | 1802 | G | 1803 | cWW | tSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGAACAG | 2 |
| CGUAUAG | 2 |
| UCAGAAG | 1 |
| UUAGCAG | 1 |
| UGAAUAG | 1 |
| GGAGUAC | 1 |
| AGAGAAU | 1 |
| GGAAUAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAAUA | 2 |
| GAACA | 2 |
| GUAUA | 2 |
| CAGAA | 1 |
| UAGCA | 1 |
| GAGUA | 1 |
| GAGAA | 1 |
Release history
| Release | 3.2 |
|---|---|
| Date | 2018-09-26 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- GNRA with one bulged base (10)
- Basepair signature
- cWW-tSH-R-R
- Heat map statistics
- Min 0.12 | Avg 0.36 | Max 0.65
Coloring options: