Motif HL_65347.1 Version HL_65347.1 of this group appears in releases 1.5 to 1.14
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-9 | 3-8 | 4-8 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3R9X_001 | 3R9X | 0.0000 | 0 | C | RNA301 | A | 1513 | G | 1514 | G | 1515 | G | 1516 | G | 1517 | A | 1518 | A | 1519 | C | 1520 | C | 1521 | U | 1522 | cWW | ncWW | ncWW | |
| 2 | HL_2AW7_030 | 2AW7 | 0.8981 | 1 | A | 16S ribosomal RNA | G | 1356 | A | 1357 | U | 1358 | C | 1359 | A | 1360 | G | 1361 | A | 1362 | A | 1363 | G | 1365 | C | 1366 | cWW | cWW | tWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AGGGGAACCU | 1 |
| GAUCAGAAUGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GGGGAACC | 1 |
| AUCAGAAUG | 1 |
Release history
| Release | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 | 1.14 |
|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-04 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 | 2014-04-27 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_65347.1 | Only in the parent motif |
|---|---|---|---|
| HL_46175.1 Compare | HL_3R9X_001 | HL_2AW7_030 | HL_2XZM_019, HL_2XZM_021, HL_1FJG_017, HL_1FJG_015, HL_4A1C_004, HL_3U5F_023, HL_3U5F_021, HL_2AW7_017, HL_2AW7_015 |
| HL_94145.1 Compare | HL_2AW7_030 | HL_3R9X_001 |
Children motifs
| Child motif | Common motif instances | Only in HL_65347.1 | Only in the child motif |
|---|---|---|---|
| HL_19033.1 Compare | HL_2AW7_030 | HL_3R9X_001 | HL_4CUX_035, HL_4CUV_037 |
| HL_46175.4 Compare | HL_3R9X_001 | HL_2AW7_030 | HL_4BPP_020, HL_4BPP_022, HL_1FJG_017, HL_1FJG_015, HL_4CUX_023, HL_1VW3_013, HL_3U5F_023, HL_4A1C_004, HL_3U5F_021, HL_2AW7_017, HL_4CUV_028, HL_2AW7_015 |
- Annotations
-
- (2)
- Basepair signature
- cWW-cWW-R-R-R-R-R
- Heat map statistics
- Min 0.90 | Avg 0.45 | Max 0.90
Coloring options: