#SLoop idPDBDisc#Non-coreAnnotationChain(s) 1 2 3 4 5 61-62-5
1 HL_2QBG_0492QBG0.65850BC1868G1869C1870A1871A1872G1873cWWtSH
2 HL_2AW7_0102AW70.56750AC379G380C381A382A383G384cWWntSH
3 HL_2QBG_0482QBG0.64220BC1806G1807A1808A1809A1810G1811cWWntSH
4 HL_3NPB_0023NPB0.40950AC60G61A62A63A64G65ncWWntSH
5 HL_4A1B_0524A1B0.570801U2531G2532C2533A2534A2535A2536cWWntSH
6 HL_2OIU_0052OIU0.41980QC28G29A30A31A32G33cWW
7 HL_1X8W_0031X8W0.38550AG234G235A236G237A238C240cWW
8 HL_2XZM_0052XZM0.51300AA226G227C228A229A230U231cWW
9 HL_4A1B_0134A1B0.289401A582G583C584A585A586U587cWWntSH
10 HL_4A1B_0184A1B0.226201C757G758C759A760A761G762cWWntSH
11 HL_2ZJR_0152ZJR0.24950GNRA (H)XC498G499G500G501A502G503cWWntSH
12 HL_3U5H_0173U5H0.230905C732G733C734A735A736G737cWWntSH
13 HL_1S72_0091S720.23930GNRA (H)0C252U253C254A255C256G257cWWntSH
14 HL_3V2F_0443V2F0.13760AC1806G1807U1808A1809A1810G1811cWWntSH
15 HL_1MZP_0011MZP0.16980GNRABC25G26C27A28A29G30cWWntSH
16 HL_2EZ6_0022EZ60.17190GNRADC11G12C13A14A15G16cWWntSH
17 HL_2EZ6_0012EZ60.14990CC11G12C13A14A15G16cWWntSH
18 HL_3CUN_0013CUN0.23380CC7G8A9A10A11G12cWWntSH
19 HL_3V2F_0163V2F0.18190AC487G488G489G491A492G493cWWntSH
20 HL_3P22_0053P220.22460EC17G18A19A20A21G22cWWntSH
21 HL_3P22_0073P220.23090GC17G18A19A20A21G22cWWntSH
22 HL_2OIU_0022OIU0.17220PC28G29A30A31A32G33cWWntSH
23 HL_2AW7_0042AW70.16830AC186G187C188A189A190G191cWWtSH
24 HL_1LNG_0021LNG0.19860BC208G209G210A211A212G213cWWtSH
25 HL_2ZJR_0622ZJR0.20080XC2637G2638A2639G2640A2641G2642cWWtSH
26 HL_3KTW_0023KTW0.19670GNRACC209G210G211A212A213G214cWWntSH
27 HL_2QBG_0662QBG0.20090BC2658G2659A2660G2661A2662G2663cWWntSH
28 HL_3U5H_0663U5H0.147005C3025G3026A3027G3028A3029G3030cWWtSH
29 HL_3V2F_0623V2F0.14910AC2658G2659A2660G2661A2662G2663cWWntSH
30 HL_1S72_0661S720.15700GNRA (H)0C2695G2696A2697G2698A2699G2700cWWntSH
31 HL_4A1B_0654A1B0.171701C3014G3015A3016G3017A3018G3019cWWntSH
32 HL_2XXA_0022XXA0.23180GC47G48G49A50A51G52cWWntSH
33 HL_3Q1Q_0043Q1Q0.20710BG135G136A137A138A139C140cWWntSH
34 HL_2QBZ_0012QBZ0.22510XC68C69A70A71A72G73cWWntSH
35 HL_3U5H_0473U5H0.246215A2164G2165A2166A2167A2168U2170cWWntSH
36 HL_1Y0Q_0071Y0Q0.31730AG204G205A206A207A208C209cWWtSH
37 HL_2ZJR_0052ZJR0.27550GNRA (H)XC146G147C148A149A150G151cWWntSH
38 HL_2QBG_0712QBG0.27200BA2856G2857C2858G2859A2860U2861cWWtSH
39 HL_1U9S_0041U9S0.23910GNRAAG204G205C206A207A208C209cWWntSH
40 HL_2QBG_0212QBG0.23380BG629G630A631A632A633C634cWWtSH
41 HL_1U9S_0021U9S0.27020GNRAAG99G100U101A102A103C104cWWntSH
42 HL_4AOB_0024AOB0.21100GNRAAA49A50A51A52A53U54cWWtSH
43 HL_3GX5_0023GX50.16350AA49G50A51A52A53U54cWWntSH
44 HL_1UN6_0041UN60.18990GNRAFG82G83A84A85A86C94cWWntSH
45 HL_1MFQ_0021MFQ0.27150GNRAAG197G198A199A200A201C202cWWtSH
46 HL_3U5H_0743U5H0.243907G88G89U90G91A92C93cWWntSH
47 HL_4A1C_0064A1C0.229303G86G87G88G89A90C91cWWntSH
48 HL_3E5C_0013E5C0.26050GNRAAG18G19A20A21A22C23cWWtSH
49 HL_1S72_0701S720.27010GNRA (H)0G2876G2877U2878A2879A2880C2881cWWntSH
50 HL_1S72_0201S720.25630GNRA (H)0G690G691A692A693A694C695cWWntSH
51 HL_3IAB_0013IAB0.28420RG78G79A80A81A82C83cWWntSH
52 HL_1FJG_0031FJG0.25690GNRA (H)AG158G159A160A161A162C163cWWntSH
53 HL_1S72_0401S720.25870GNRA (H)0G1628G1629A1630A1631A1632C1633cWWntSH
54 HL_1X8W_0011X8W0.26210AG149G150A151A152A153C154cWW
55 HL_4A1B_0204A1B0.258801G869G870A871A872A873C874cWWntSH
56 HL_3T4B_0013T4B0.24710AG9G10A11A12A13C14cWWntSH
57 HL_1NBS_0071NBS0.26850GNRABA204G205A206A207A208U209cWWntSH
58 HL_3V7E_0063V7E0.22170GNRA (H)DG305G306A307A308A309C310cWWntSH
59 HL_1U6B_0011U6B0.23890GNRABG23G24A25A26A27C28cWWntSH
60 HL_4FAW_0064FAW0.23010AG274G275A276A277A278C279cWWntSH
61 HL_3GX5_0033GX50.23700AG73G74A75A76A77C78cWWntSH
62 HL_4AOB_0034AOB0.21550GNRAAG73G74A75A76A77C78cWWntSH
63 HL_1GID_0041GID0.24100GNRABG149G150A151A152A153C154cWWntSH
64 HL_1GID_0011GID0.24390AG149G150A151A152A153C154cWWntSH
65 HL_3MOJ_0013MOJ0.26200GNRAAG2529G2530A2531A2532A2533C2534cWWntSH
66 HL_3U5H_0193U5H0.233605G844G845A846A847A848C849cWWtSH
67 HL_3RW6_0013RW60.28230GNRAHG27G28A29A30A31C32cWWtSH
68 HL_2AW7_0032AW70.28600AG158G159A160A161A162C163cWWntSH
69 HL_3V2F_0273V2F0.22622AC955G956A957A959A960G962cWWntSH
70 HL_2ZJR_0262ZJR0.31682GNRA (H)XA966G967C968A970A971U973cWWntSH
71 HL_1S72_0281S720.22561GNRA (H)0G1054G1055U1056A1057A1058C1060cWWntSH
72 HL_3U5H_0253U5H0.300515G1126G1127U1128A1129A1130C1132cWWntSH
73 HL_4A1B_0264A1B0.334611G1153G1154U1155A1156A1157C1159cWW
74 HL_1S72_0361S720.47951GNRA (H)0G1468C1469A1470A1471C1472C1474cWWtSHa
75 HL_3Q1Q_0103Q1Q0.59870CG37C38A39C40C41C42cWWntWH
76 HL_2XZM_0342XZM0.57910AA1660G1661C1662A1663A1664U1665cWW
77 HL_1Y0Q_0011Y0Q0.32320AA21G22U23A24A25U26cWWntSH
78 HL_2XZM_0232XZM0.28040AA1056G1057A1058A1059A1060U1061cWW
79 HL_3U5F_0253U5F0.214406A1084G1085A1086A1087A1088U1089cWW
80 HL_3U5H_0483U5H0.253805A2220G2221A2222A2223A2224U2225cWW
81 HL_2AW7_0222AW70.22970AA1012G1013A1014G1015A1016U1017cWW
82 HL_2Y9B_0012Y9B0.24320VU812G813A814A815A816A817cWWntSH
83 HL_2AW7_0192AW70.18570AC862U863A864A865C866G867cWWntSHa
84 HL_1FJG_0191FJG0.23330GNRA (H)AC862U863A864A865C866G867cWWntSH
85 HL_3D0U_0043D0U0.22480GNRAAC142G143A144A145A146G147cWWntSH
86 HL_2OIU_0062OIU0.15570QC59G60A61A62A63G64cWWntSH
87 HL_1HMH_0011HMH0.15370GNRAAC104G21|||LA22|||LA23|||LA24|||LG114cWWntSH
88 HL_1FJG_0271FJG0.16600GNRA (H)AC1165G1166A1167A1168A1169G1171cWWntSH
89 HL_1KH6_0021KH60.14990GNRAAC28G29A30A31A32G33cWWntSH
90 HL_1X8W_0051X8W0.28210AC322G323A324A325A326G327cWW
91 HL_1FJG_0221FJG0.31630GNRA (H)AU1012G1013A1014A1015A1016G1017cWWtSH
92 HL_1KXK_0011KXK0.20690GNRAAU33G34A35A36A37G38cWWntSH
93 HL_4FNJ_0014FNJ0.20840AU16G17A18A19A20G21cWWntSH
94 HL_1FJG_0071FJG0.26420GNRA (H)AU296G297A298G299A300G301cWWntSH
95 HL_2AW7_0072AW70.22510AU296G297A298G299A300G301cWWntSH
96 HL_3RG5_0033RG50.29960GNRA (H)AU47|||CU47|||DA47|||EG47|||FC47|||GG47|||HcWWntSHa
97 HL_2IL9_0032IL90.17770GNRAAC6119G6119|||AA6119|||BA6119|||CA6119|||DG6119|||EncWWtSH
98 HL_4GMA_0044GMA0.14150ZC119G120A121A122A123G124cWWntSH
99 HL_4FRG_0024FRG0.15970GNRABC46G47A48A49A50G51cWWntSH
100 HL_2OIU_0012OIU0.13510GNRAPC10G11A12A13A14G15cWWntSH
101 HL_2OIU_0042OIU0.14820QC10G11A12A13A14G15cWWntSH
102 HL_1S72_0231S720.12930GNRA (H)0C804G805A806A807A808G809cWWntSH
103 HL_1G1X_0011G1X0.14120GNRADC590G591A592A593A594G649cWWntSH
104 HL_1RLG_0021RLG0.10590GNRADC9G10A11A12A13G14cWWntSH
105 HL_1HMH_0021HMH0.10950CC104G21|||LA22|||LA23|||LA24|||LG114cWWntSH
106 HL_3U5H_0113U5H0.088005U382G383A384A385A386A387cWWtSH
107 HL_4A1B_0114A1B0.000001U381G382A383A384A385A386cWWntSH
108 HL_3NVI_0013NVI0.12570EC9G10A11A12A13G14cWWntSH
109 HL_4ENB_0024ENB0.13430GNRA (H)AU28G29A30A31A32A33cWWntSH
110 HL_3UCZ_0013UCZ0.12780RC31G32A33A34A35G36cWWntSH
111 HL_3IWN_0013IWN0.12810GNRAAC21G22A23A24A25G26cWWntSH
112 HL_2PXV_0012PXV0.18440BC153G154A155A156A157G158cWWtSH
113 HL_1Q96_0011Q960.15930GNRAAU13G14A15G16A17A18cWWntSH
114 HL_1S72_0541S720.13070GNRA (H)0C2248G2249G2250G2251A2252G2253cWWntSH
115 HL_3DVZ_0013DVZ0.14900AC2658G2659A2660G2661A2662G2663cWWntSH
116 HL_1S72_0721S720.16330GNRA (H)9C89G90C91G92A93G94cWWntSH
117 HL_3AM1_0033AM10.14140GNRABC45G46A47G48A49G50cWWntSH
118 HL_3U5F_0263U5F0.171406C1121G1122C1123A1124A1125G1126cWWntSH
119 HL_1FJG_0201FJG0.15880GNRA (H)AC897G898C899A900A901G902cWWntSH
120 HL_1S72_0481S720.21320GNRA (H)0C1862G1863C1864A1865A1866G1867cWWntSH
121 HL_2AW7_0202AW70.22620AC897G898C899A900A901G902cWWntSH
122 HL_2Y9B_0022Y9B0.25950VG850G851U852A853A854C855cWWtSH
123 HL_2XZM_0242XZM0.52620AC1094G1095C1096A1097A1098G1099cWWntsS
124 HL_3U5H_0333U5H0.460705G1544A1545A1546G1547C1548U1549cWW
125 HL_3Q1Q_0083Q1Q0.26770BG284G285U286A287A288C289cWW
126 HL_2ZJR_0672ZJR0.26870GNRA (H)XA2831G2832C2833A2834A2835U2836cWW
127 HL_3V2F_0203V2F0.22700AG629G630A631A632A633C634cWW
128 HL_1Y0Q_0031Y0Q0.29230AA101G102U103A104A105U106cWWntSH
129 HL_2NZ4_0122NZ40.25290RG108G109U110G111A112C113cWW
130 HL_2NZ4_0162NZ40.30130SG108G109U110G111A112C113cWW
131 HL_3U5H_0103U5H0.294905A357G358U359G360A361U362cWW
132 HL_3Q1Q_0033Q1Q0.30660BG92G93U94G95A96C97cWW
133 HL_1FJG_0281FJG0.30420GNRA (H)AG1265G1266C1267A1268A1269C1270cWW
134 HL_4FAW_0034FAW0.30850AG89G90C91G92A93C94cWW
135 HL_2HO7_0042HO70.34510BG113G114C115G116A117C118cWW
136 HL_3Q1Q_0063Q1Q0.38490BG187G188C189A190A191C192cWW
137 HL_3U5H_0363U5H0.359305G1634G1635U1636A1637A1638C1639cWW
138 HL_4A1B_0354A1B0.325801G1658G1659U1660A1661A1662C1663cWW
139 HL_3U5F_0293U5F0.326806A1296G1297U1298G1299A1300U1301cWW
140 HL_2XZM_0272XZM0.38940AA1268G1269U1270G1271A1272U1273cWW
141 HL_3V2F_0693V2F0.31980BG86G87C88G89A90C91cWW
142 HL_2ZJR_0562ZJR0.36360GNRA (H)XG2353G2354A2355A2356A2357C2358cWW
143 HL_1M5O_0041M5O0.55030EG74G75A76A77A78C79ncWW
144 HL_1S72_0331S720.43570GNRA (H)0U1326G1327A1328A1329A1330A1331cWW
145 HL_4A1B_0294A1B0.463601C1429G1430U1431G1432A1433G1434cWW
146 HL_3U5H_0303U5H0.419205C1403G1404U1405A1406A1407G1408cWW
147 HL_1FJG_0241FJG0.38890GNRA (H)AC1076G1077U1078G1079A1080G1081cWW
148 HL_1Q96_0031Q960.39770CU13G14A15G16A17A18cWW
149 HL_2AW7_0242AW70.36870AU1076G1077U1078G1079A1080A1081cWW
150 HL_1S72_0151S720.33470GNRA (H)0U468G469U470G471A472A473cWW
151 HL_4A1B_0104A1B0.321201U356G357C358G359A360A361cWW
152 HL_2BTE_0032BTE0.41190GNRABC46G47C47|||AA47|||BA47|||CG47|||DcWW
153 HL_3V2F_0293V2F0.34450AC1222G1223C1224G1225A1226G1227cWW
154 HL_2BTE_0072BTE0.34820GNRA (H)EC46G47C47|||AA47|||BA47|||CG47|||DcWW
155 HL_3SD3_0023SD30.33780AC58G59A60G61A62G63cWW
156 HL_3ADC_0033ADC0.38480GNRA (H)CC47|||DG47|||EA47|||FG47|||GU47|||HG47|||IcWW
157 HL_3NKB_0023NKB0.30690GNRABC49G50A51A52A53G54cWW
158 HL_2ZJR_0142ZJR0.32940GNRA (H)XC473G474U475G476A477G478cWW
159 HL_3V2F_0153V2F0.27910AC462G463U464G465A466G467cWW
160 HL_2QBG_0162QBG0.27680BC462G463U464G465A466G467cWW
161 HL_1S72_0171S720.31410GNRA (H)0C576G577C578G579A580G581cWW
162 HL_3U5H_0653U5H0.291605C2963G2964U2965G2966A2967G2968cWW
163 HL_1S72_0651S720.32530GNRA (H)0C2629G2630U2631G2632A2633G2634cWW
164 HL_3V2F_0673V2F0.33800AC2856G2857C2858G2859A2860G2861cWW
165 HL_2QBG_0652QBG0.30640BC2594G2595U2596G2597A2598G2599cWW
166 HL_2AW7_0282AW70.37630AC1265G1266C1267G1268A1269G1270cWW
167 HL_3V2F_0613V2F0.30830AC2594G2595U2596G2597A2598G2599cWWntSH
168 HL_4A1B_0644A1B0.336501C2951G2952U2953G2954A2955G2956cWW
169 HL_2ZJR_0612ZJR0.30010GNRA (H)XC2573G2574U2575G2576A2577G2578cWWntSH
170 HL_488D_001488D0.31900BC154G31|||LU32|||LA33|||LA34|||LG164cWW
171 HL_488D_002488D0.31900DC154G31|||LU32|||LA33|||LA34|||LG164cWW
172 HL_3E5C_0023E5C0.30840GNRAAC41G42A43A44A45G46cWW
173 HL_2OIU_0032OIU0.27870GNRAPC59G60A61A62A63G64cWW
174 HL_3SUX_0023SUX0.22040GNRAXC65G66A67A68A69G70cWW
175 HL_2ZZM_0032ZZM0.30350GNRABC47G47|||AU47|||BA47|||CG47|||DG47|||EcWW
176 HL_1Y0Q_0041Y0Q0.32770AC130G131A132U133A134G135cWW
177 HL_2QBG_0282QBG0.30022BU955G956C957A959A960G962cWWntSH
178 HL_1S72_0451S720.23271GNRA (H)0C1793G1794G1795A1796A1797G1799cWW
179 HL_2ZJR_0472ZJR0.24210GNRA (H)XU1856G1857C1858A1859A1860G1861cWW
180 HL_1FJG_0101FJG0.15570GNRA (H)AC379G380C381A382A383G384cWW
181 HL_3V2F_0563V2F0.17390AC2374G2375A2376A2377A2378G2379cWW
182 HL_2QBG_0602QBG0.22050BC2374G2375A2376A2377A2378G2379cWW
183 HL_3U5H_0133U5H0.176905C599G600U601A602A603G604cWWntSH
184 HL_4A1B_0594A1B0.178701C2733G2734A2735A2736A2737G2738cWW
185 HL_2XZM_0312XZM0.26500AU1472G1473G1474G1475A1476A1477cWW
186 HL_1S72_0601S720.24680GNRA (H)0C2411G2412A2413A2414A2415G2416cWW
187 HL_4A1B_0174A1B0.241401C732G733A734A735A736G737cWW
188 HL_2ZJR_0192ZJR0.28550GNRA (H)XC640G641A642A643A644G645cWW
189 HL_3V2F_0453V2F0.34780AU1864G1865C1866A1876A1877G1878cWW
190 HL_3U5H_0163U5H0.324005U707G708A709A710A711G712cWW
191 HL_3U5H_0603U5H0.290705U2744G2745A2746A2747A2748G2749cWW
192 HL_2QBG_0592QBG0.31760BU2356G2357A2358C2359G2360G2361cWW
193 HL_2ZJR_0692ZJR0.43420GNRA (H)YC88G89C90A91G92G93cWW
194 HL_1U6B_0041U6B0.44720GNRA variationBC153A154A155A156C157G158cWW
195 HL_3U5F_0033U5F0.534516G154U155A156A157U158C160cWW
196 HL_2QBG_0332QBG0.56710BU1222G1223U1224G1225A1226G1227cWW
197 HL_2ZJR_0312ZJR0.60840GNRA (H)XC1235G1236G1237A1238A1239G1240cWW
198 HL_3NPN_0013NPN0.41900AC20G21A22A23A24G25cWW
199 HL_2XZM_0202XZM0.29720AC915G916A917A918A919G920cWW
200 HL_3U5F_0223U5F0.362406C937G938A939A940A941G942cWW
201 HL_2AW7_0162AW70.35330AC726G727A728A729G730G731cWW
202 HL_1G1X_0031G1X0.38070GNRAEC726G727A728A729G730G731cWW
203 HL_1FJG_0161FJG0.39540GNRA (H)AC726G727A728A729G730G731cWW
204 HL_2ZJR_0342ZJR0.59480GNRA variation (H)XC1376G1377A1378A1379C1380G1381cWW
205 HL_2QBG_0362QBG0.47510BC1363G1364A1365A1366A1367G1368cWW
206 HL_3V2F_0323V2F0.47670AC1363G1364A1365A1366A1367G1368cWW
207 HL_1FJG_0321FJG0.58280GNRA (H)AC1515G1516G1517A1518A1519G1520cWW
208 HL_2AW7_0322AW70.47060AG1515G1516G1517A1518A1519C1520cWW
209 HL_3U5F_0373U5F0.540006G1778U1779G1780A1781A1782C1783cWW
210 HL_2XZM_0352XZM0.56300AG1731U1732G1733A1734A1735C1736cWW
211 HL_3U5H_0393U5H0.522905A1760C1761C1762U1763U1764U1765ncWW
212 HL_2XZM_0092XZM0.47700AU359U360A361G362G363G364ncWW
213 HL_3AM1_0023AM10.46870GNRA variationBC32U33U34C35G36G37cWW
214 HL_1FJG_0131FJG0.50080AC522A523G524C525C526G527cWW
215 HL_2AW7_0132AW70.52990AC522A523G524C525C526G527cWW
216 HL_4A1B_0464A1B0.428201U2160C2161A2162A2163C2164A2165cWW
217 HL_1JID_0011JID0.46820GNRA variationBG146G147G148A149G150C151cWW
218 HL_1MFQ_0011MFQ0.49640GNRA variationAG146G147G148A149G150C151cWW
219 HL_2XZM_0152XZM0.52590AC563A564G565C566C567G568cWW
220 HL_3U5F_0153U5F0.605906C569A570G571C572C573G574cWW
221 HL_3U5F_0333U5F0.555806C1501G1502A1503G1504A1505G1506cWWntSH
222 HL_3Q1Q_0013Q1Q0.67710BA29C30A31C32C33U34cWW

3D structures

Complete motif including flanking bases
SequenceCounts
CGAAAG41
GGAAAC27
CGCAAG17
CGUGAG11
CGAGAG10
GGUAAC6
CGUAAG5
CGGAAG5
AGAAAU5
UGAAAA5
UGAAAG5
CGCGAG5
AGCAAU4
GGUGAC4
CAGCCG4
CGGGAG3
GGCAAC3
GGUAAGC3
AGUGAU3
GGCGAC3
CGAAGG3
AGUAAU2
CUAACG2
UGAGAG2
UGAGAA2
UGUGAA2
UGCAAG2
GUGAAC2
GGGAGC2
UGCAAA1
GGAGAC1
CUCACG1
CCAAAG1
AGAAAGU1
AGCGAU1
AAAAAU1
GGGGAC1
CGAUAACG1
AGCUAACU1
GCAACUC1
GCACCC1
AGAGAU1
UUAGCG1
GAAGCU1
UGCGAA1
CGAGUG1
CGUAGG1
CGAUAG1
UGCUAACG1
CGGAACG1
UGGGAA1
UGACGG1
CGCAGG1
CAAACG1
GUAAUUC1
UGUGAG1
CGAACG1
GGGAAC1
ACCUUU1
UUAGGG1
CUUCGG1
UCAACA1
ACACCU1
Non-Watson-Crick part of the motif
SequenceCounts
GAAA83
GCAA27
GUGA21
GAGA16
GUAA13
GCGA10
GGAA6
GGGA5
AGCC4
GUAAG3
GAAG3
GCUAAC2
CACC2
UAAC2
UGAA2
GGAG2
UCAC1
CAAA1
GAAAG1
AAAA1
GAUAAC1
CAACU1
UAGC1
AAGC1
GAGU1
GUAG1
GAUA1
GGAAC1
GACG1
GCAG1
AAAC1
UAAUU1
GAAC1
CCUU1
UAGG1
UUCG1
CAAC1

Release history

Release0.60.70.8
Date2013-02-172013-02-172013-02-17
StatusUpdated, 1 parentExact matchExact match

Parent motifs

Parent motifCommon motif instancesOnly in HL_67042.3Only in the parent motif
HL_67042.2
Compare
HL_2OIU_002, HL_4A1B_017, HL_2OIU_001, HL_2OIU_006, HL_4A1B_013, HL_2OIU_004, HL_4A1B_011, HL_2XZM_005, HL_1M5O_004, HL_2Y9B_002, HL_4A1B_018, HL_4A1B_059, HL_4A1C_006, HL_2ZJR_019, HL_3V2F_015, HL_2ZJR_014, HL_2ZJR_015, HL_2XZM_009, HL_4ENB_002, HL_2XXA_002, HL_4A1B_010, HL_3IWN_001, HL_1S72_054, HL_2QBG_016, HL_3V2F_016, HL_4AOB_003, HL_3E5C_001, HL_2XZM_031, HL_2XZM_035, HL_2XZM_034, HL_2ZJR_069, HL_3U5H_047, HL_2OIU_003, HL_2Y9B_001, HL_4A1B_065, HL_1KXK_001, HL_1HMH_001, HL_3U5H_048, HL_1HMH_002, HL_2QBG_021, HL_1S72_040, HL_2EZ6_001, HL_3KTW_002, HL_1S72_045, HL_2ZJR_062, HL_2ZJR_061, HL_2ZJR_067, HL_1FJG_022, HL_2AW7_019, HL_1FJG_020, HL_1FJG_027, HL_2QBG_028, HL_2AW7_013, HL_1FJG_028, HL_1S72_048, HL_1Q96_001, HL_2XZM_027, HL_1MFQ_002, HL_3NKB_002, HL_2XZM_023, HL_2XZM_020, HL_3U5H_013, HL_3SD3_002, HL_3SUX_002, HL_1U9S_002, HL_3U5H_033, HL_1S72_036, HL_3U5H_030, HL_1S72_033, HL_2QBG_033, HL_3U5H_039, HL_1S72_070, HL_3U5F_029, HL_3NVI_001, HL_1FJG_032, HL_2QBG_066, HL_3MOJ_001, HL_2EZ6_002, HL_2AW7_003, HL_2AW7_004, HL_3AM1_002, HL_2AW7_007, HL_3UCZ_001, HL_1FJG_024, HL_3GX5_002, HL_2ZZM_003, HL_3V2F_062, HL_1FJG_019, HL_3V2F_067, HL_3V2F_069, HL_3U5H_010, HL_2BTE_003, HL_1S72_020, HL_3U5H_025, HL_3GX5_003, HL_1X8W_001, HL_2ZJR_047, HL_1S72_028, HL_1Q96_003, HL_1FJG_007, HL_2QBZ_001, HL_1FJG_003, HL_2QBG_049, HL_2BTE_007, HL_3NPN_001, HL_2AW7_032, HL_488D_001, HL_488D_002, HL_1MFQ_001, HL_4A1B_052, HL_4AOB_002, HL_2XZM_024, HL_2AW7_016, HL_3U5F_022, HL_3V2F_056, HL_3V2F_027, HL_3ADC_003, HL_1JID_001, HL_1KH6_002, HL_1S72_015, HL_1S72_017, HL_3RG5_003, HL_3U5H_017, HL_3U5H_016, HL_2ZJR_056, HL_2HO7_004, HL_3U5F_015, HL_1FJG_013, HL_1FJG_010, HL_1UN6_004, HL_3RW6_001, HL_1LNG_002, HL_2AW7_022, HL_1Y0Q_007, HL_1Y0Q_004, HL_1Y0Q_003, HL_2AW7_024, HL_1Y0Q_001, HL_2QBG_059, HL_2AW7_028, HL_3U5F_025, HL_1GID_004, HL_3T4B_001, HL_3U5H_011, HL_4A1B_029, HL_3U5H_019, HL_4A1B_026, HL_1U6B_004, HL_3V2F_044, HL_4A1B_020, HL_1S72_009, HL_3AM1_003, HL_2PXV_001, HL_3DVZ_001, HL_4A1B_046, HL_2ZJR_026, HL_3U5F_003, HL_2IL9_003, HL_3NPB_002, HL_1S72_023, HL_2QBG_065, HL_3Q1Q_008, HL_2QBG_060, HL_3Q1Q_003, HL_3Q1Q_001, HL_2ZJR_005, HL_3Q1Q_006, HL_1X8W_003, HL_3Q1Q_004, HL_4FNJ_001, HL_3P22_005, HL_3P22_007, HL_4A1B_035, HL_2NZ4_016, HL_3V2F_032, HL_2NZ4_012, HL_1RLG_002, HL_3V7E_006, HL_3E5C_002, HL_1MZP_001, HL_2QBG_071, HL_2ZJR_034, HL_1X8W_005, HL_3U5F_037, HL_3U5H_074, HL_2ZJR_031, HL_3U5F_033, HL_1S72_072, HL_1GID_001, HL_2AW7_020, HL_1NBS_007, HL_3CUN_001, HL_3Q1Q_010, HL_2OIU_005, HL_3U5F_026, HL_3IAB_001, HL_2QBG_036, HL_1U9S_004, HL_3V2F_029, HL_1G1X_003, HL_3D0U_004, HL_2XZM_015, HL_4GMA_004, HL_3V2F_020, HL_1G1X_001, HL_1FJG_016, HL_1U6B_001, HL_4FRG_002, HL_3U5H_065, HL_3U5H_066, HL_3V2F_045, HL_3U5H_060, HL_3U5H_036, HL_2QBG_048, HL_1S72_060, HL_3V2F_061, HL_1S72_065, HL_1S72_066, HL_2AW7_010, HL_4A1B_064HL_4FAW_006, HL_4FAW_003HL_3G78_003, HL_3G78_006

Children motifs

Child motifCommon motif instancesOnly in HL_67042.3Only in the child motif
HL_67042.4
Compare
HL_2OIU_002, HL_4A1B_017, HL_2OIU_001, HL_2OIU_006, HL_4A1B_013, HL_2OIU_004, HL_4A1B_011, HL_2XZM_005, HL_1M5O_004, HL_2Y9B_002, HL_4A1B_018, HL_4A1B_059, HL_4A1C_006, HL_2ZJR_019, HL_3V2F_015, HL_2ZJR_014, HL_2ZJR_015, HL_2XZM_009, HL_4ENB_002, HL_2XXA_002, HL_4A1B_010, HL_3IWN_001, HL_1S72_054, HL_2QBG_016, HL_3V2F_016, HL_4FAW_003, HL_4AOB_003, HL_3E5C_001, HL_2XZM_031, HL_2XZM_035, HL_2XZM_034, HL_2ZJR_069, HL_3U5H_047, HL_2OIU_003, HL_2Y9B_001, HL_4A1B_065, HL_1KXK_001, HL_1HMH_001, HL_3U5H_048, HL_1HMH_002, HL_2QBG_021, HL_1S72_040, HL_2EZ6_001, HL_3KTW_002, HL_1S72_045, HL_2ZJR_062, HL_2ZJR_061, HL_2ZJR_067, HL_1FJG_022, HL_2AW7_019, HL_1FJG_020, HL_1FJG_027, HL_2QBG_028, HL_2AW7_013, HL_1FJG_028, HL_1S72_048, HL_1Q96_001, HL_2XZM_027, HL_1MFQ_002, HL_3NKB_002, HL_2XZM_023, HL_2XZM_020, HL_3U5H_013, HL_3SD3_002, HL_3SUX_002, HL_1U9S_002, HL_3U5H_033, HL_1S72_036, HL_3U5H_030, HL_1S72_033, HL_2QBG_033, HL_3U5H_039, HL_1S72_070, HL_3U5F_029, HL_3NVI_001, HL_1FJG_032, HL_2QBG_066, HL_3MOJ_001, HL_2EZ6_002, HL_2AW7_003, HL_2AW7_004, HL_3AM1_002, HL_2AW7_007, HL_3UCZ_001, HL_1FJG_024, HL_3GX5_002, HL_2ZZM_003, HL_3V2F_062, HL_1FJG_019, HL_3V2F_067, HL_3V2F_069, HL_3U5H_010, HL_2BTE_003, HL_1S72_020, HL_3U5H_025, HL_3GX5_003, HL_1X8W_001, HL_2ZJR_047, HL_1S72_028, HL_1Q96_003, HL_1FJG_007, HL_2QBZ_001, HL_1FJG_003, HL_4FAW_006, HL_2QBG_049, HL_2BTE_007, HL_3NPN_001, HL_2AW7_032, HL_488D_001, HL_488D_002, HL_1MFQ_001, HL_4A1B_052, HL_4AOB_002, HL_2XZM_024, HL_2AW7_016, HL_3U5F_022, HL_3V2F_056, HL_3V2F_027, HL_3ADC_003, HL_1JID_001, HL_1KH6_002, HL_1S72_015, HL_1S72_017, HL_3RG5_003, HL_3U5H_017, HL_3U5H_016, HL_2ZJR_056, HL_2HO7_004, HL_3U5F_015, HL_1FJG_013, HL_1FJG_010, HL_1UN6_004, HL_3RW6_001, HL_1LNG_002, HL_2AW7_022, HL_1Y0Q_007, HL_1Y0Q_004, HL_1Y0Q_003, HL_2AW7_024, HL_1Y0Q_001, HL_2QBG_059, HL_2AW7_028, HL_3U5F_025, HL_1GID_004, HL_3T4B_001, HL_3U5H_011, HL_4A1B_029, HL_3U5H_019, HL_4A1B_026, HL_1U6B_004, HL_3V2F_044, HL_4A1B_020, HL_1S72_009, HL_3AM1_003, HL_2PXV_001, HL_3DVZ_001, HL_4A1B_046, HL_2ZJR_026, HL_3U5F_003, HL_2IL9_003, HL_3NPB_002, HL_1S72_023, HL_2QBG_065, HL_3Q1Q_008, HL_2QBG_060, HL_3Q1Q_003, HL_3Q1Q_001, HL_2ZJR_005, HL_3Q1Q_006, HL_1X8W_003, HL_3Q1Q_004, HL_4FNJ_001, HL_3P22_005, HL_3P22_007, HL_4A1B_035, HL_2NZ4_016, HL_3V2F_032, HL_2NZ4_012, HL_1RLG_002, HL_3V7E_006, HL_3E5C_002, HL_1MZP_001, HL_2QBG_071, HL_2ZJR_034, HL_1X8W_005, HL_3U5F_037, HL_3U5H_074, HL_2ZJR_031, HL_3U5F_033, HL_1S72_072, HL_1GID_001, HL_2AW7_020, HL_1NBS_007, HL_3CUN_001, HL_3Q1Q_010, HL_2OIU_005, HL_3U5F_026, HL_3IAB_001, HL_2QBG_036, HL_1U9S_004, HL_3V2F_029, HL_1G1X_003, HL_3D0U_004, HL_2XZM_015, HL_4GMA_004, HL_3V2F_020, HL_1G1X_001, HL_1FJG_016, HL_1U6B_001, HL_4FRG_002, HL_3U5H_065, HL_3U5H_066, HL_3V2F_045, HL_3U5H_060, HL_3U5H_036, HL_2QBG_048, HL_1S72_060, HL_3V2F_061, HL_1S72_065, HL_1S72_066, HL_2AW7_010, HL_4A1B_064HL_4B5R_002, HL_4B5R_003, HL_3W3S_003
Annotations
  • (139)
  • GNRA (H) (44)
  • GNRA (34)
  • GNRA variation (4)
  • GNRA variation (H) (1)
  • Basepair signature
    cWW-tSH-R-R
    Heat map statistics
    Min 0.01 | Avg 0.40 | Max 0.99
    Help

    Coloring options:

    Copyright 2025 BGSU RNA group. Page generated in 5.2062 s