Motif HL_68864.1 Version HL_68864.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5A2Q_005 | 5A2Q | 0.6370 | 1 | T-loop with 1 bulged base (H) | 2 | SSU rRNA | G | 288 | G | 289 | U | 290 | G | 291 | A | 292 | C | 293 | C | 295 | cWW | |
| 2 | HL_3J79_005 | 3J79 | 0.4600 | 1 | T-loop with 2 stacked bulged bases (H) | A | LSU rRNA | C | 202 | A | 203 | G | 204 | G | 205 | A | 206 | A | 207 | G | 209 | cWW | ntsS |
| 3 | HL_2GDI_004 | 2GDI | 0.4440 | 1 | Y | TPP riboswitch (THI element) | G | 66 | A | 67 | U | 68 | A | 69 | A | 70 | U | 71 | C | 73 | cWW | ||
| 4 | HL_2A64_002 | 2A64 | 0.2888 | 1 | T-loop with 2 stacked bulged bases | A | RNase P class B | C | 69 | U | 70 | G | 71 | A | 72 | G | 73 | A | 74 | G | 76 | cWW | tWH |
| 5 | HL_5FDU_009 | 5FDU | 0.1839 | 1 | 1A | LSU rRNA | U | 329 | U | 330 | G | 331 | G | 332 | G | 333 | A | 334 | G | 336 | cWW | tWH | |
| 6 | HL_3DHS_002 | 3DHS | 0.1570 | 1 | A | RNase P class B | C | 69 | U | 70 | G | 71 | A | 72 | G | 73 | A | 74 | G | 76 | cWW | tWH | |
| 7 | HL_4IOA_009 | 4IOA | 0.1431 | 1 | T-loop with 1 bulged base | X | LSU rRNA | C | 316 | U | 317 | G | 318 | G | 319 | A | 320 | A | 321 | G | 323 | cWW | tWH |
| 8 | HL_5J7L_142 | 5J7L | 0.0839 | 1 | T-loop with 2 stacked bulged bases | DA | LSU rRNA | C | 305 | U | 306 | G | 307 | G | 308 | A | 309 | A | 310 | G | 312 | cWW | tWH |
| 9 | HL_5EAQ_002 | 5EAQ | 0.0000 | 1 | A | Hammerhead ribozyme (type III) | C | 27 | U | 28 | G | 29 | G | 30 | G | 31 | A | 32 | G | 34 | cWW | tWH | |
| 10 | HL_4V91_005 | 4V91 | 0.1044 | 1 | T-loop with 2 stacked bulged bases (H) | 1 | LSU rRNA | U | 194 | U | 195 | G | 196 | G | 197 | A | 198 | A | 199 | A | 201 | cWW | tWH |
| 11 | HL_4V9F_010 | 4V9F | 0.1258 | 1 | T-loop with 2 stacked bulged bases | 0 | LSU rRNA | U | 312 | U | 313 | G | 314 | G | 315 | A | 316 | A | 317 | A | 319 | cWW | tWH |
| 12 | HL_4V88_118 | 4V88 | 0.1515 | 1 | T-loop with 2 stacked bulged bases (H) | A5 | LSU rRNA | U | 194 | U | 195 | G | 196 | G | 197 | A | 198 | A | 199 | A | 201 | cWW | tWH |
| 13 | HL_4V8P_165 | 4V8P | 0.2249 | 1 | T-loop with 2 stacked bulged bases (H) | F1 | LSU rRNA | U | 194 | U | 195 | G | 196 | G | 197 | A | 198 | A | 199 | A | 201 | cWW | tWH |
| 14 | HL_3J9W_045 | 3J9W | 0.1924 | 1 | T-loop with 1 bulged base (H) | BA | LSU rRNA | C | 349 | U | 350 | G | 351 | G | 352 | A | 353 | A | 354 | G | 356 | cWW | tWH |
| 15 | HL_5AJ3_019 | 5AJ3 | 0.1999 | 1 | A | SSU rRNA | A | 760 | U | 761 | G | 762 | A | 763 | A | 764 | A | 765 | U | 767 | cWW | tWH | |
| 16 | HL_3J7A_004 | 3J7A | 0.3424 | 1 | A | SSU rRNA | A | 245 | A | 246 | G | 247 | G | 248 | A | 249 | A | 250 | U | 252 | cWW | ||
| 17 | HL_4V88_191 | 4V88 | 0.3761 | 1 | T-loop with 1 bulged base | A6 | SSU rRNA | G | 243 | A | 244 | U | 245 | G | 246 | A | 247 | U | 248 | C | 250 | cWW | |
| 18 | HL_3JAM_006 | 3JAM | 0.3977 | 1 | T-loop with 1 bulged base (H) | 2 | SSU rRNA | G | 242 | A | 243 | U | 244 | G | 245 | A | 246 | U | 247 | C | 249 | cWW | |
| 19 | HL_4BTS_115 | 4BTS | 0.5066 | 1 | T-loop with 1 bulged base (H) | DA | SSU rRNA | G | 240 | A | 241 | U | 242 | G | 243 | A | 244 | A | 245 | C | 247 | cWW | |
| 20 | HL_4V9F_039 | 4V9F | 0.6032 | 0 | Other HL | 0 | LSU rRNA | C | 1594 | G | 1595 | U | 1596 | A | 1597 | A | 1598 | U | 1599 | G | 1600 | cWW | |
| 21 | HL_4V8P_197 | 4V8P | 0.6159 | 0 | F1 | LSU rRNA | G | 1743 | A | 1744 | U | 1745 | U | 1746 | A | 1747 | U | 1748 | C | 1749 | cWW | ||
| 22 | HL_3J79_037 | 3J79 | 0.6168 | 0 | A | LSU rRNA | A | 1876 | U | 1877 | U | 1878 | U | 1879 | A | 1880 | C | 1881 | U | 1882 | cWW | ntSHa | |
| 23 | HL_5AJ0_042 | 5AJ0 | 0.6091 | 0 | A2 | LSU rRNA | G | 2643 | U | 2644 | U | 2645 | C | 2646 | G | 2647 | C | 2648 | C | 2649 | cWW | ntSH | |
| 24 | HL_3J7P_039 | 3J7P | 0.7520 | 0 | 5 | LSU rRNA | G | 2664 | U | 2665 | U | 2666 | C | 2667 | G | 2668 | C | 2669 | C | 2670 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUGGAAAG | 3 |
| UUGGAACA | 3 |
| CUGAGAUG | 2 |
| GAUGAUUC | 2 |
| GUUCGCC | 2 |
| GGUGACUC | 1 |
| CAGGAAUG | 1 |
| GAUAAUGC | 1 |
| UUGGGAAG | 1 |
| CUGGGAUG | 1 |
| UUGGAAUA | 1 |
| AUGAAACU | 1 |
| AAGGAAUU | 1 |
| GAUGAAUC | 1 |
| CGUAAUG | 1 |
| GAUUAUC | 1 |
| AUUUACU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGGAAA | 3 |
| UGGAAC | 3 |
| AGGAAU | 2 |
| UGAGAU | 2 |
| AUGAUU | 2 |
| UUCGC | 2 |
| GUGACU | 1 |
| AUAAUG | 1 |
| UGGGAA | 1 |
| UGGGAU | 1 |
| UGGAAU | 1 |
| UGAAAC | 1 |
| AUGAAU | 1 |
| GUAAU | 1 |
| AUUAU | 1 |
| UUUAC | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (10)
- T-loop with 2 stacked bulged bases (H) (4)
- T-loop with 1 bulged base (H) (4)
- T-loop with 2 stacked bulged bases (3)
- T-loop with 1 bulged base (2)
- Other HL (1)
- Basepair signature
- cWW-tWH-R-R-R
- Heat map statistics
- Min 0.08 | Avg 0.45 | Max 0.88
Coloring options: