Motif HL_71309.2 Version HL_71309.2 of this group appears in releases 3.84 to 3.85

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	Annotation	Chain(s)	Standardized name		1		2		3		4		5		6		7		8		9	1-9	2-6
1	HL_8SP9_004	8SP9	0.2626	T-loop with 2 stacked bulged bases	C	Enterovirus 5' cloverleaf cis-acting replication element	G	130	U	131	U	132	C	133	A	134	A	135	G	136	U	137	C	138	cWW	ntWH
2	HL_4V8Q_110	4V8Q	0.2421	T-loop with 2 stacked bulged bases	BY	SsrA	G	66	U	67	U	68	C	69	G	70	A	71	C	72	U	73	C	74	cWW	ntWH
3	HL_3ICQ_005	3ICQ	0.2528	T-loop with 2 stacked bulged bases	E	RNA (62-MER)	G	53	U	54	U	55	C	56	G	57	A	58	U	59	C	60	C	61	cWW	tWH
4	HL_3WFS_003	3WFS	0.2613	T-loop with 2 stacked bulged bases	A	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	U	59	U	60	C	61	cWW	tWH
5	HL_7UZ0_003	7UZ0	0.2017	T-loop with 2 stacked bulged bases	A	tRNA	G	68	U	69	U	70	C	71	G	72	A	73	G	74	U	75	C	76	cWW	tWH
6	HL_4TUE_035	4TUE	0.2550	T-loop with 2 stacked bulged bases	QV	tRNA	G	53	U	54	U	55	C	56	A	57	A	58	A	59	U	60	C	61	ncWW	tWH
7	HL_5WT1_003	5WT1	0.1901	T-loop with 2 stacked bulged bases	C	tRNA	G	53	U	54	U	55	C	56	A	57	A	58	A	59	U	60	C	61	cWW	tWH
8	HL_4P5J_003	4P5J	0.2039	T-loop with 2 stacked bulged bases	A	tRNA-like 3' UTR element	G	46	U	47	G	48	C	49	A	50	A	51	C	52	U	53	C	54	cWW	tWH
9	HL_4GCW_002	4GCW	0.1883	T-loop with 2 stacked bulged bases	B	TRNA(THR)	G	53	U	54	U	55	C	56	G	57	A	58	G	59	C	60	C	61	cWW	tWH
10	HL_6CU1_001	6CU1	0.2134	T-loop with 2 stacked bulged bases	A	Y RNA-like	G	24	U	25	U	26	C	27	G	28	A	29	G	30	A	31	C	32	cWW	tWH
11	HL_7K98_003	7K98	0.1823	T-loop with 2 stacked bulged bases	C	tRNA	G	54	U	55	U	56	C	57	G	58	A	59	U	60	C	61	C	62	cWW	tWH
12	HL_7EQJ_006	7EQJ	0.1893	T-loop with 2 stacked bulged bases	B	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	U	59	C	60	C	61	cWW	tWH
13	HL_1QU2_003	1QU2	0.2165	T-loop with 2 stacked bulged bases	T	tRNA	G	53	U	54	U	55	C	56	A	57	A	58	G	59	U	60	C	61	cWW	tWH
14	HL_1U0B_003	1U0B	0.1862	T-loop with 2 stacked bulged bases	A	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	C	59	U	60	C	61	cWW	tWH
15	HL_3AKZ_012	3AKZ	0.0000	T-loop with 2 stacked bulged bases	E	tRNAGln	G	53	U	54	U	55	C	56	G	57	A	58	G	59	U	60	C	61	cWW	tWH
16	HL_3EPH_003	3EPH	0.1707	T-loop with 2 stacked bulged bases	E	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	U	59	C	60	C	61	cWW	tWH
17	HL_1N78_003	1N78	0.1904	T-loop with 2 stacked bulged bases	C	tRNA(Glu)	G	553	U	554	U	555	C	556	G	557	A	558	U	559	U	560	C	561	cWW	tWH
18	HL_3TUP_003	3TUP	0.2334	T-loop with 2 stacked bulged bases	T	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	U	59	U	60	C	61	cWW	ntWH
19	HL_4QEI_003	4QEI	0.2464	T-loop with 2 stacked bulged bases	C	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	U	59	U	60	C	61	cWW
20	HL_5E6M_003	5E6M	0.2298	T-loop with 2 stacked bulged bases	C	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	U	59	U	60	C	61	cWW
21	HL_3AM1_004	3AM1	0.2542	T-loop with 2 stacked bulged bases	B	ASL-truncated tRNA	G	59	U	60	U	61	C	62	G	63	A	64	U	65	U	66	C	67	cWW	tWH
22	HL_3IGI_001	3IGI	0.2115	T-loop with 2 stacked bulged bases	A	Group IIC intron	G	30	U	31	G	32	A	33	G	34	A	35	G	36	U	37	C	38	cWW	tWH
23	HL_6JQ5_003	6JQ5	0.2296	T-loop with 2 stacked bulged bases	B	Hatchet ribozyme	G	6	U	7	G	8	A	9	G	10	A	11	A	12	U	13	C	14	cWW	tWH
24	HL_6JQ5_001	6JQ5	0.2256	T-loop with 2 stacked bulged bases	A	Hatchet ribozyme	G	6	U	7	G	8	A	9	G	10	A	11	A	12	U	13	C	14	cWW	tWH
25	HL_6JQ6_003	6JQ6	0.2143	T-loop with 2 stacked bulged bases	U	Hatchet ribozyme	G	6	U	7	G	8	A	9	G	10	A	11	A	12	U	13	C	14	cWW	tWH
26	HL_4GXY_002	4GXY	0.2893	T-loop with 2 stacked bulged bases	A	Adenosylcobalamin riboswitch	G	49	U	50	G	51	C	52	A	53	A	54	G	55	U	56	C	57	cWW	tWH

3D structures

Complete motif including flanking bases

Sequence	Counts
GUUCGAUUC	6
GUUCGAUCC	4
GUGAGAAUC	3
GUUCAAGUC	2
GUUCGACUC	2
GUUCGAGUC	2
GUUCAAAUC	2
GUGCAACUC	1
GUUCGAGCC	1
GUUCGAGAC	1
GUGAGAGUC	1
GUGCAAGUC	1

Non-Watson-Crick part of the motif

Sequence	Counts
UUCGAUU	6
UUCGAUC	4
UGAGAAU	3
UUCAAGU	2
UUCGACU	2
UUCGAGU	2
UUCAAAU	2
UGCAACU	1
UUCGAGC	1
UUCGAGA	1
UGAGAGU	1
UGCAAGU	1

Release history

Release	3.84	3.85
Date	2024-05-22	2024-06-19
Status	Updated, 1 parent	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: T-loop with 2 stacked bulged bases (26)
Basepair signature: cWW-tWH-F-F-F-F-F
Heat map statistics: Min 0.05 | Avg 0.21 | Max 0.40

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