RNA 3D Hub //

Motif HL_73067.1 Version HL_73067.1 of this group appears in releases 3.77 to 3.79

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5 6 7 81-82-7
1 HL_4V9F_0514V9F0.282510 LSU rRNAC1990A1991U1992C1993A1994G1995A1997G1998cWW
2 HL_7RQB_0497RQB0.248611A LSU rRNAG1949G1950U1951A1952A1953G1954U1956C1957cWW
3 HL_5J7L_1825J7L0.25691DA LSU rRNAG1949G1950U1951A1952A1953G1954U1956C1957cWWncWB
4 HL_4WF9_0464WF90.25761X LSU rRNAG1976G1977U1978A1979A1980G1981U1983C1984cWWncWB
5 HL_7A0S_0487A0S0.22561X LSU rRNAG1932G1933U1934A1935A1936G1937U1939C1940cWWncWB
6 HL_5TBW_0505TBW0.000011 LSU rRNAU2292C2293U2294A2295A2296U2297A2299G2300cWW
7 HL_1U9S_0031U9S0.50601ARIBONUCLEASE PG181G182U183A184A185G186A187C189cWW
8 HL_4R4V_0034R4V0.55621T-loop relatedAVS ribozyme RNAG689U690U691G692A693C694A696C697cWW
9 HL_5J7L_1615J7L0.59213DA LSU rRNAC1064U1065U1066A1067G1068A1069A1073G1074cWW
10 HL_5D8H_0015D8H0.61443A LSU rRNAC1174U1175U1176A1177G1178A1179A1183G1184cWW
11 HL_1MMS_0011MMS0.61483C23S RIBOSOMAL RNAC1064U1065U1066A1067G1068A1069A1073G1074cWW
12 HL_6PRV_0016PRV0.60963A LSU rRNAC1064U1065U1066A1067G1068A1069A1073G1074cWW
13 HL_3CUL_0033CUL0.51151T-loop relatedCRNA (92-MER)G69U70U71C72G73A74U76C77cWWcwW
14 HL_7OSM_1177OSM0.53152ASIT tRNAG53U54U55C56G57A58C61C62cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
GGUAAGUUC4
CUUAGAAGCAG4
CAUCAGUAG1
UCUAAUUAG1
GGUAAGAGC1
GUUGACUAC1
GUUCGAAUC1
GUUCGAUUCC1
Non-Watson-Crick part of the motif
SequenceCounts
GUAAGUU4
UUAGAAGCA4
AUCAGUA1
CUAAUUA1
GUAAGAG1
UUGACUA1
UUCGAAU1
UUCGAUUC1

Release history

Release3.773.783.79
Date2023-12-062024-01-032024-01-03
StatusNew id, > 2 parentsExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (12)
  • T-loop related (2)
    • Basepair signature
    cWW-F-F-F-F-F-F
    Heat map statistics
    Min 0.07 | Avg 0.45 | Max 0.89
    Help

    Coloring options:

    HL_4V9F_051:HL_4V9F_051 = 0HL_4V9F_051:HL_7RQB_049 = 0.155HL_4V9F_051:HL_5J7L_182 = 0.1579HL_4V9F_051:HL_4WF9_046 = 0.1721HL_4V9F_051:HL_7A0S_048 = 0.1678HL_4V9F_051:HL_5TBW_050 = 0.2825HL_4V9F_051:HL_1U9S_003 = 0.5205HL_4V9F_051:HL_4R4V_003 = 0.5986HL_4V9F_051:HL_5J7L_161 = 0.6486HL_4V9F_051:HL_5D8H_001 = 0.6695HL_4V9F_051:HL_1MMS_001 = 0.6695HL_4V9F_051:HL_6PRV_001 = 0.6744HL_4V9F_051:HL_3CUL_003 = 0.6166HL_4V9F_051:HL_7OSM_117 = 0.6932HL_7RQB_049:HL_4V9F_051 = 0.155HL_7RQB_049:HL_7RQB_049 = 0HL_7RQB_049:HL_5J7L_182 = 0.0735HL_7RQB_049:HL_4WF9_046 = 0.0936HL_7RQB_049:HL_7A0S_048 = 0.1073HL_7RQB_049:HL_5TBW_050 = 0.2486HL_7RQB_049:HL_1U9S_003 = 0.5459HL_7RQB_049:HL_4R4V_003 = 0.5879HL_7RQB_049:HL_5J7L_161 = 0.643HL_7RQB_049:HL_5D8H_001 = 0.6703HL_7RQB_049:HL_1MMS_001 = 0.6624HL_7RQB_049:HL_6PRV_001 = 0.6631HL_7RQB_049:HL_3CUL_003 = 0.6177HL_7RQB_049:HL_7OSM_117 = 0.653HL_5J7L_182:HL_4V9F_051 = 0.1579HL_5J7L_182:HL_7RQB_049 = 0.0735HL_5J7L_182:HL_5J7L_182 = 0HL_5J7L_182:HL_4WF9_046 = 0.0941HL_5J7L_182:HL_7A0S_048 = 0.1222HL_5J7L_182:HL_5TBW_050 = 0.2569HL_5J7L_182:HL_1U9S_003 = 0.5744HL_5J7L_182:HL_4R4V_003 = 0.6212HL_5J7L_182:HL_5J7L_161 = 0.6716HL_5J7L_182:HL_5D8H_001 = 0.7001HL_5J7L_182:HL_1MMS_001 = 0.6933HL_5J7L_182:HL_6PRV_001 = 0.6946HL_5J7L_182:HL_3CUL_003 = 0.6461HL_5J7L_182:HL_7OSM_117 = 0.6716HL_4WF9_046:HL_4V9F_051 = 0.1721HL_4WF9_046:HL_7RQB_049 = 0.0936HL_4WF9_046:HL_5J7L_182 = 0.0941HL_4WF9_046:HL_4WF9_046 = 0HL_4WF9_046:HL_7A0S_048 = 0.1209HL_4WF9_046:HL_5TBW_050 = 0.2576HL_4WF9_046:HL_1U9S_003 = 0.5629HL_4WF9_046:HL_4R4V_003 = 0.6071HL_4WF9_046:HL_5J7L_161 = 0.6761HL_4WF9_046:HL_5D8H_001 = 0.6974HL_4WF9_046:HL_1MMS_001 = 0.6946HL_4WF9_046:HL_6PRV_001 = 0.6949HL_4WF9_046:HL_3CUL_003 = 0.6421HL_4WF9_046:HL_7OSM_117 = 0.6628HL_7A0S_048:HL_4V9F_051 = 0.1678HL_7A0S_048:HL_7RQB_049 = 0.1073HL_7A0S_048:HL_5J7L_182 = 0.1222HL_7A0S_048:HL_4WF9_046 = 0.1209HL_7A0S_048:HL_7A0S_048 = 0HL_7A0S_048:HL_5TBW_050 = 0.2256HL_7A0S_048:HL_1U9S_003 = 0.5374HL_7A0S_048:HL_4R4V_003 = 0.5832HL_7A0S_048:HL_5J7L_161 = 0.6233HL_7A0S_048:HL_5D8H_001 = 0.6484HL_7A0S_048:HL_1MMS_001 = 0.6428HL_7A0S_048:HL_6PRV_001 = 0.6438HL_7A0S_048:HL_3CUL_003 = 0.5907HL_7A0S_048:HL_7OSM_117 = 0.6101HL_5TBW_050:HL_4V9F_051 = 0.2825HL_5TBW_050:HL_7RQB_049 = 0.2486HL_5TBW_050:HL_5J7L_182 = 0.2569HL_5TBW_050:HL_4WF9_046 = 0.2576HL_5TBW_050:HL_7A0S_048 = 0.2256HL_5TBW_050:HL_5TBW_050 = 0HL_5TBW_050:HL_1U9S_003 = 0.506HL_5TBW_050:HL_4R4V_003 = 0.5562HL_5TBW_050:HL_5J7L_161 = 0.5921HL_5TBW_050:HL_5D8H_001 = 0.6144HL_5TBW_050:HL_1MMS_001 = 0.6148HL_5TBW_050:HL_6PRV_001 = 0.6096HL_5TBW_050:HL_3CUL_003 = 0.5115HL_5TBW_050:HL_7OSM_117 = 0.5315HL_1U9S_003:HL_4V9F_051 = 0.5205HL_1U9S_003:HL_7RQB_049 = 0.5459HL_1U9S_003:HL_5J7L_182 = 0.5744HL_1U9S_003:HL_4WF9_046 = 0.5629HL_1U9S_003:HL_7A0S_048 = 0.5374HL_1U9S_003:HL_5TBW_050 = 0.506HL_1U9S_003:HL_1U9S_003 = 0HL_1U9S_003:HL_4R4V_003 = 0.3547HL_1U9S_003:HL_5J7L_161 = 0.4119HL_1U9S_003:HL_5D8H_001 = 0.36HL_1U9S_003:HL_1MMS_001 = 0.3756HL_1U9S_003:HL_6PRV_001 = 0.3852HL_1U9S_003:HL_3CUL_003 = 0.346HL_1U9S_003:HL_7OSM_117 = 0.6641HL_4R4V_003:HL_4V9F_051 = 0.5986HL_4R4V_003:HL_7RQB_049 = 0.5879HL_4R4V_003:HL_5J7L_182 = 0.6212HL_4R4V_003:HL_4WF9_046 = 0.6071HL_4R4V_003:HL_7A0S_048 = 0.5832HL_4R4V_003:HL_5TBW_050 = 0.5562HL_4R4V_003:HL_1U9S_003 = 0.3547HL_4R4V_003:HL_4R4V_003 = 0HL_4R4V_003:HL_5J7L_161 = 0.4355HL_4R4V_003:HL_5D8H_001 = 0.429HL_4R4V_003:HL_1MMS_001 = 0.4387HL_4R4V_003:HL_6PRV_001 = 0.4483HL_4R4V_003:HL_3CUL_003 = 0.4078HL_4R4V_003:HL_7OSM_117 = 0.6472HL_5J7L_161:HL_4V9F_051 = 0.6486HL_5J7L_161:HL_7RQB_049 = 0.643HL_5J7L_161:HL_5J7L_182 = 0.6716HL_5J7L_161:HL_4WF9_046 = 0.6761HL_5J7L_161:HL_7A0S_048 = 0.6233HL_5J7L_161:HL_5TBW_050 = 0.5921HL_5J7L_161:HL_1U9S_003 = 0.4119HL_5J7L_161:HL_4R4V_003 = 0.4355HL_5J7L_161:HL_5J7L_161 = 0HL_5J7L_161:HL_5D8H_001 = 0.1738HL_5J7L_161:HL_1MMS_001 = 0.1617HL_5J7L_161:HL_6PRV_001 = 0.1789HL_5J7L_161:HL_3CUL_003 = 0.3687HL_5J7L_161:HL_7OSM_117 = 0.826HL_5D8H_001:HL_4V9F_051 = 0.6695HL_5D8H_001:HL_7RQB_049 = 0.6703HL_5D8H_001:HL_5J7L_182 = 0.7001HL_5D8H_001:HL_4WF9_046 = 0.6974HL_5D8H_001:HL_7A0S_048 = 0.6484HL_5D8H_001:HL_5TBW_050 = 0.6144HL_5D8H_001:HL_1U9S_003 = 0.36HL_5D8H_001:HL_4R4V_003 = 0.429HL_5D8H_001:HL_5J7L_161 = 0.1738HL_5D8H_001:HL_5D8H_001 = 0HL_5D8H_001:HL_1MMS_001 = 0.0661HL_5D8H_001:HL_6PRV_001 = 0.0898HL_5D8H_001:HL_3CUL_003 = 0.3434HL_5D8H_001:HL_7OSM_117 = 0.8884HL_1MMS_001:HL_4V9F_051 = 0.6695HL_1MMS_001:HL_7RQB_049 = 0.6624HL_1MMS_001:HL_5J7L_182 = 0.6933HL_1MMS_001:HL_4WF9_046 = 0.6946HL_1MMS_001:HL_7A0S_048 = 0.6428HL_1MMS_001:HL_5TBW_050 = 0.6148HL_1MMS_001:HL_1U9S_003 = 0.3756HL_1MMS_001:HL_4R4V_003 = 0.4387HL_1MMS_001:HL_5J7L_161 = 0.1617HL_1MMS_001:HL_5D8H_001 = 0.0661HL_1MMS_001:HL_1MMS_001 = 0HL_1MMS_001:HL_6PRV_001 = 0.0735HL_1MMS_001:HL_3CUL_003 = 0.3418HL_1MMS_001:HL_7OSM_117 = 0.8632HL_6PRV_001:HL_4V9F_051 = 0.6744HL_6PRV_001:HL_7RQB_049 = 0.6631HL_6PRV_001:HL_5J7L_182 = 0.6946HL_6PRV_001:HL_4WF9_046 = 0.6949HL_6PRV_001:HL_7A0S_048 = 0.6438HL_6PRV_001:HL_5TBW_050 = 0.6096HL_6PRV_001:HL_1U9S_003 = 0.3852HL_6PRV_001:HL_4R4V_003 = 0.4483HL_6PRV_001:HL_5J7L_161 = 0.1789HL_6PRV_001:HL_5D8H_001 = 0.0898HL_6PRV_001:HL_1MMS_001 = 0.0735HL_6PRV_001:HL_6PRV_001 = 0HL_6PRV_001:HL_3CUL_003 = 0.3275HL_6PRV_001:HL_7OSM_117 = 0.8805HL_3CUL_003:HL_4V9F_051 = 0.6166HL_3CUL_003:HL_7RQB_049 = 0.6177HL_3CUL_003:HL_5J7L_182 = 0.6461HL_3CUL_003:HL_4WF9_046 = 0.6421HL_3CUL_003:HL_7A0S_048 = 0.5907HL_3CUL_003:HL_5TBW_050 = 0.5115HL_3CUL_003:HL_1U9S_003 = 0.346HL_3CUL_003:HL_4R4V_003 = 0.4078HL_3CUL_003:HL_5J7L_161 = 0.3687HL_3CUL_003:HL_5D8H_001 = 0.3434HL_3CUL_003:HL_1MMS_001 = 0.3418HL_3CUL_003:HL_6PRV_001 = 0.3275HL_3CUL_003:HL_3CUL_003 = 0HL_3CUL_003:HL_7OSM_117 = 0.4828HL_7OSM_117:HL_4V9F_051 = 0.6932HL_7OSM_117:HL_7RQB_049 = 0.653HL_7OSM_117:HL_5J7L_182 = 0.6716HL_7OSM_117:HL_4WF9_046 = 0.6628HL_7OSM_117:HL_7A0S_048 = 0.6101HL_7OSM_117:HL_5TBW_050 = 0.5315HL_7OSM_117:HL_1U9S_003 = 0.6641HL_7OSM_117:HL_4R4V_003 = 0.6472HL_7OSM_117:HL_5J7L_161 = 0.826HL_7OSM_117:HL_5D8H_001 = 0.8884HL_7OSM_117:HL_1MMS_001 = 0.8632HL_7OSM_117:HL_6PRV_001 = 0.8805HL_7OSM_117:HL_3CUL_003 = 0.4828HL_7OSM_117:HL_7OSM_117 = 0HL_4V9F_051HL_7RQB_049HL_5J7L_182HL_4WF9_046HL_7A0S_048HL_5TBW_050HL_1U9S_003HL_4R4V_003HL_5J7L_161HL_5D8H_001HL_1MMS_001HL_6PRV_001HL_3CUL_003HL_7OSM_117Discrepancy0.000.200.400.600.80
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