Motif HL_73067.1 Version HL_73067.1 of this group appears in releases 3.77 to 3.79
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-7 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4V9F_051 | 4V9F | 0.2825 | 1 | 0 | LSU rRNA | C | 1990 | A | 1991 | U | 1992 | C | 1993 | A | 1994 | G | 1995 | A | 1997 | G | 1998 | cWW | ||
| 2 | HL_7RQB_049 | 7RQB | 0.2486 | 1 | 1A | LSU rRNA | G | 1949 | G | 1950 | U | 1951 | A | 1952 | A | 1953 | G | 1954 | U | 1956 | C | 1957 | cWW | ||
| 3 | HL_5J7L_182 | 5J7L | 0.2569 | 1 | DA | LSU rRNA | G | 1949 | G | 1950 | U | 1951 | A | 1952 | A | 1953 | G | 1954 | U | 1956 | C | 1957 | cWW | ncWB | |
| 4 | HL_4WF9_046 | 4WF9 | 0.2576 | 1 | X | LSU rRNA | G | 1976 | G | 1977 | U | 1978 | A | 1979 | A | 1980 | G | 1981 | U | 1983 | C | 1984 | cWW | ncWB | |
| 5 | HL_7A0S_048 | 7A0S | 0.2256 | 1 | X | LSU rRNA | G | 1932 | G | 1933 | U | 1934 | A | 1935 | A | 1936 | G | 1937 | U | 1939 | C | 1940 | cWW | ncWB | |
| 6 | HL_5TBW_050 | 5TBW | 0.0000 | 1 | 1 | LSU rRNA | U | 2292 | C | 2293 | U | 2294 | A | 2295 | A | 2296 | U | 2297 | A | 2299 | G | 2300 | cWW | ||
| 7 | HL_1U9S_003 | 1U9S | 0.5060 | 1 | A | RIBONUCLEASE P | G | 181 | G | 182 | U | 183 | A | 184 | A | 185 | G | 186 | A | 187 | C | 189 | cWW | ||
| 8 | HL_4R4V_003 | 4R4V | 0.5562 | 1 | A | VS ribozyme RNA | G | 689 | U | 690 | U | 691 | G | 692 | A | 693 | C | 694 | A | 696 | C | 697 | cWW | ||
| 9 | HL_5J7L_161 | 5J7L | 0.5921 | 3 | DA | LSU rRNA | C | 1064 | U | 1065 | U | 1066 | A | 1067 | G | 1068 | A | 1069 | A | 1073 | G | 1074 | cWW | ||
| 10 | HL_5D8H_001 | 5D8H | 0.6144 | 3 | A | LSU rRNA | C | 1174 | U | 1175 | U | 1176 | A | 1177 | G | 1178 | A | 1179 | A | 1183 | G | 1184 | cWW | ||
| 11 | HL_1MMS_001 | 1MMS | 0.6148 | 3 | C | 23S RIBOSOMAL RNA | C | 1064 | U | 1065 | U | 1066 | A | 1067 | G | 1068 | A | 1069 | A | 1073 | G | 1074 | cWW | ||
| 12 | HL_6PRV_001 | 6PRV | 0.6096 | 3 | A | LSU rRNA | C | 1064 | U | 1065 | U | 1066 | A | 1067 | G | 1068 | A | 1069 | A | 1073 | G | 1074 | cWW | ||
| 13 | HL_3CUL_003 | 3CUL | 0.5115 | 1 | C | RNA (92-MER) | G | 69 | U | 70 | U | 71 | C | 72 | G | 73 | A | 74 | U | 76 | C | 77 | cWW | cwW | |
| 14 | HL_7OSM_117 | 7OSM | 0.5315 | 2 | ASIT | tRNA | G | 53 | U | 54 | U | 55 | C | 56 | G | 57 | A | 58 | C | 61 | C | 62 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGUAAGUUC | 4 |
| CUUAGAAGCAG | 4 |
| CAUCAGUAG | 1 |
| UCUAAUUAG | 1 |
| GGUAAGAGC | 1 |
| GUUGACUAC | 1 |
| GUUCGAAUC | 1 |
| GUUCGAUUCC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUAAGUU | 4 |
| UUAGAAGCA | 4 |
| AUCAGUA | 1 |
| CUAAUUA | 1 |
| GUAAGAG | 1 |
| UUGACUA | 1 |
| UUCGAAU | 1 |
| UUCGAUUC | 1 |
- Annotations
- Basepair signature
- cWW-F-F-F-F-F-F
- Heat map statistics
- Min 0.07 | Avg 0.45 | Max 0.89
Coloring options: