Motif HL_94364.1 Version HL_94364.1 of this group appears in releases 1.16 to 1.17
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 1-11 | 2-9 | 3-7 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1VX2_009 | 1VX2 | 0.2830 | 1 | 2 | C | 441 | C | 442 | U | 443 | G | 444 | A | 445 | G | 446 | A | 447 | A | 448 | A | 449 | C | 450 | G | 452 | ncWW | ||
| 2 | HL_4BPP_010 | 4BPP | 0.1660 | 1 | A | C | 384 | C | 385 | U | 386 | G | 387 | A | 388 | G | 389 | A | 390 | A | 391 | A | 392 | C | 393 | G | 395 | cWW | tWH | tWH |
| 3 | HL_3J7A_008 | 3J7A | 0.0900 | 1 | A | C | 399 | C | 400 | U | 401 | G | 402 | A | 403 | G | 404 | A | 405 | A | 406 | A | 407 | U | 408 | G | 410 | cWW | tWH | tWH |
| 4 | HL_3U5F_010 | 3U5F | 0.0000 | 1 | 6 | C | 393 | C | 394 | U | 395 | G | 396 | A | 397 | G | 398 | A | 399 | A | 400 | A | 401 | C | 402 | G | 404 | cWW | tWH | tWH |
| 5 | HL_4CUX_010 | 4CUX | 0.1664 | 1 | 2 | C | 393 | C | 394 | U | 395 | G | 396 | A | 397 | G | 398 | A | 399 | A | 400 | A | 401 | C | 402 | G | 404 | cWW | tWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCUGAGAAACGG | 4 |
| CCUGAGAAAUAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CUGAGAAACG | 4 |
| CUGAGAAAUA | 1 |
Release history
Parent motifs
| Parent motif | Common motif instances | Only in HL_94364.1 | Only in the parent motif |
|---|---|---|---|
| HL_86398.2 Compare | HL_4BPP_010, HL_3U5F_010, HL_4CUX_010 | HL_1VX2_009, HL_3J7A_008 |
Children motifs
| Child motif | Common motif instances | Only in HL_94364.1 | Only in the child motif |
|---|---|---|---|
| HL_94364.2 Compare | HL_4BPP_010, HL_3U5F_010, HL_3J7A_008, HL_4CUX_010 | HL_1VX2_009 | HL_4W23_009 |
- Annotations
-
- (5)
- Basepair signature
- cWW-R-tWH-R-tWH-R-R-R
- Heat map statistics
- Min 0.09 | Avg 0.17 | Max 0.30
Coloring options: