Motif HL_86769.3 Version HL_86769.3 of this group appears in releases 3.77 to 3.88
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 3-6 | 4-5 | 4-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4WF9_001 | 4WF9 | 0.3429 | 1 | X | LSU rRNA | G | 67 | A | 68 | C | 69 | G | 70 | A | 71 | A | 73 | U | 74 | ncWW | cSH | ||
| 2 | HL_1ET4_001 | 1ET4 | 0.2083 | 1 | A | RNA APTAMER, 35-MER | C | 219 | A | 220 | C | 221 | C | 222 | U | 223 | A | 225 | G | 226 | cWW | |||
| 3 | HL_4P5J_004 | 4P5J | 0.0000 | 1 | A | tRNA-like 3' UTR element | A | 69 | G | 70 | G | 71 | G | 72 | U | 73 | A | 75 | U | 76 | cWW | csS | cSH | |
| 4 | HL_6MJ0_010 | 6MJ0 | 0.1604 | 1 | B | tRNA-like 3' UTR element | A | 89 | G | 90 | G | 91 | G | 92 | U | 93 | A | 95 | U | 96 | cWW | cSH | ||
| 5 | HL_3SKL_004 | 3SKL | 0.7273 | 2 | B | RNA (66-MER) | C | 38 | A | 39 | U | 40 | A | 41 | A | 42 | G | 44 | G | 46 | cWW | |||
| 6 | HL_3SKI_001 | 3SKI | 0.7376 | 2 | A | RNA (68-MER) | C | 39 | A | 40 | U | 41 | A | 42 | A | 43 | G | 45 | G | 47 | cWW | ncsS |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AGGGUCAU | 2 |
| CAUAAUGGG | 2 |
| GACGAUAU | 1 |
| CACCUCAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GGGUCA | 2 |
| AUAAUGG | 2 |
| ACGAUA | 1 |
| ACCUCA | 1 |
Release history
| Release | 3.77 | 3.78 | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 | 3.88 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2023-12-06 | 2024-01-03 | 2024-01-03 | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 | 2024-08-14 | 2024-09-11 |
| Status | Updated, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (6)
- Basepair signature
- cWW-F-cSS-cSH
- Heat map statistics
- Min 0.09 | Avg 0.43 | Max 0.80
Coloring options: