Motif HL_86880.5 Version HL_86880.5 of this group appears in releases 3.54 to 3.76
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 1-5 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_7RQB_041 | 7RQB | 0.6433 | 1 | 1A | LSU rRNA | C | 1631 | A | 1631|||A | A | 1632 | G | 1633 | G | 1635 | cWW | |
| 2 | HL_5NDI_002 | 5NDI | 0.5351 | 1 | B | RNA (20-mer) | G | 8 | A | 9 | C | 10 | G | 11 | C | 13 | cWW | |
| 3 | HL_5NDH_001 | 5NDH | 0.5359 | 1 | A | RNA (16-mer) | G | 6 | A | 7 | C | 8 | G | 9 | C | 11 | cWW | |
| 4 | HL_5VJ9_003 | 5VJ9 | 0.4971 | 1 | C | RNA (16-mer) | G | 6 | A | 7 | C | 8 | G | 9 | C | 11 | cWW | |
| 5 | HL_4V9F_035 | 4V9F | 0.1923 | 2 | 0 | LSU rRNA | G | 1430 | U | 1432 | G | 1433 | A | 1434 | C | 1436 | cWW | |
| 6 | HL_5J7L_166 | 5J7L | 0.2604 | 2 | DA | LSU rRNA | G | 1324 | U | 1326 | A | 1327 | A | 1328 | C | 1330 | cWW | |
| 7 | HL_4WF9_033 | 4WF9 | 0.0000 | 2 | X | LSU rRNA | G | 1361 | U | 1363 | C | 1364 | G | 1365 | C | 1367 | cWW | |
| 8 | HL_7RQB_034 | 7RQB | 0.0899 | 2 | 1A | LSU rRNA | G | 1324 | U | 1326 | C | 1327 | G | 1328 | C | 1330 | cWW | |
| 9 | HL_7A0S_033 | 7A0S | 0.1276 | 2 | X | LSU rRNA | G | 1337 | U | 1339 | C | 1340 | G | 1341 | C | 1343 | cWW | |
| 10 | HL_5TBW_032 | 5TBW | 0.2478 | 2 | 1 | LSU rRNA | A | 1506 | C | 1508 | A | 1509 | G | 1510 | U | 1512 | cWW | |
| 11 | HL_5J7L_170 | 5J7L | 0.1953 | 2 | DA | LSU rRNA | G | 1492 | A | 1494 | A | 1495 | A | 1496 | C | 1498 | cWW | |
| 12 | HL_7RQB_038 | 7RQB | 0.2302 | 2 | 1A | LSU rRNA | G | 1492 | A | 1494 | A | 1495 | A | 1496 | C | 1498 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GACGAC | 3 |
| GGUCGUC | 2 |
| GCAAAUC | 2 |
| CAAGAG | 1 |
| GCUGAUC | 1 |
| GUUAAUC | 1 |
| GCUCGUC | 1 |
| AGCAGUU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| ACGA | 3 |
| GUCGU | 2 |
| CAAAU | 2 |
| AAGA | 1 |
| CUGAU | 1 |
| UUAAU | 1 |
| CUCGU | 1 |
| GCAGU | 1 |
Release history
| Release | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2022-02-02 | 2022-03-02 | 2022-03-30 | 2022-04-27 | 2022-05-25 | 2022-06-22 | 2022-07-20 | 2022-08-17 | 2022-10-12 | 2022-11-09 | 2022-12-07 | 2023-01-04 | 2023-02-01 | 2023-03-01 | 2023-03-29 | 2023-04-26 | 2023-05-24 | 2023-06-21 | 2023-07-19 | 2023-08-16 | 2023-09-13 | 2023-10-11 | 2023-11-08 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.
Coloring options: