#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name for chain 1 2 3 4 51-5
1 HL_7RQB_0417RQB0.64331Pseudoknot geometry with 3' bulge (H)1A LSU rRNAC1631A1631|||AA1632G1633G1635cWW
2 HL_5NDI_0025NDI0.53511Pseudoknot geometry with 3' bulgeBRNA (20-mer)G8A9C10G11C13cWW
3 HL_5NDH_0015NDH0.53591Pseudoknot geometry with 3' bulgeARNA (16-mer)G6A7C8G9C11cWW
4 HL_5VJ9_0035VJ90.49711Pseudoknot geometry with 3' bulgeCRNA (16-mer)G6A7C8G9C11cWW
5 HL_4V9F_0354V9F0.19232Pseudoknot geometry with 3' bulge0 LSU rRNAG1430U1432G1433A1434C1436cWW
6 HL_5J7L_1665J7L0.26042Pseudoknot geometry with 3' bulgeDA LSU rRNAG1324U1326A1327A1328C1330cWW
7 HL_4WF9_0334WF90.00002Pseudoknot geometry with 3' bulgeX LSU rRNAG1361U1363C1364G1365C1367cWW
8 HL_7RQB_0347RQB0.08992Pseudoknot geometry with 3' bulge (H)1A LSU rRNAG1324U1326C1327G1328C1330cWW
9 HL_7A0S_0337A0S0.12762Pseudoknot geometry with 3' bulgeX LSU rRNAG1337U1339C1340G1341C1343cWW
10 HL_5TBW_0325TBW0.24782Pseudoknot geometry with 3' bulge1 LSU rRNAA1506C1508A1509G1510U1512cWW
11 HL_5J7L_1705J7L0.19532Pseudoknot geometry with 3' bulgeDA LSU rRNAG1492A1494A1495A1496C1498cWW
12 HL_7RQB_0387RQB0.23022Pseudoknot geometry with 3' bulge (H)1A LSU rRNAG1492A1494A1495A1496C1498cWW

3D structures

Complete motif including flanking bases
SequenceCounts
GACGAC3
GGUCGUC2
GCAAAUC2
CAAGAG1
GCUGAUC1
GUUAAUC1
GCUCGUC1
AGCAGUU1
Non-Watson-Crick part of the motif
SequenceCounts
ACGA3
GUCGU2
CAAAU2
AAGA1
CUGAU1
UUAAU1
CUCGU1
GCAGU1

Release history

Release3.543.553.563.573.583.593.603.613.623.633.643.653.663.673.683.693.703.713.723.733.743.753.76
Date2022-02-022022-03-022022-03-302022-04-272022-05-252022-06-222022-07-202022-08-172022-10-122022-11-092022-12-072023-01-042023-02-012023-03-012023-03-292023-04-262023-05-242023-06-212023-07-192023-08-162023-09-132023-10-112023-11-08
StatusUpdated, 1 parentExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Pseudoknot geometry with 3' bulge (9)
  • Pseudoknot geometry with 3' bulge (H) (3)
  • Basepair signature
    cWW-R-R
    Heat map statistics
    Min 0.07 | Avg 0.39 | Max 0.79
    Help

    Coloring options:

    HL_7RQB_041:HL_7RQB_041 = 0HL_7RQB_041:HL_5NDI_002 = 0.4064HL_7RQB_041:HL_5NDH_001 = 0.4669HL_7RQB_041:HL_5VJ9_003 = 0.4244HL_7RQB_041:HL_4V9F_035 = 0.5923HL_7RQB_041:HL_5J7L_166 = 0.6721HL_7RQB_041:HL_4WF9_033 = 0.6433HL_7RQB_041:HL_7RQB_034 = 0.6988HL_7RQB_041:HL_7A0S_033 = 0.7428HL_7RQB_041:HL_5TBW_032 = 0.7942HL_7RQB_041:HL_5J7L_170 = 0.695HL_7RQB_041:HL_7RQB_038 = 0.7056HL_5NDI_002:HL_7RQB_041 = 0.4064HL_5NDI_002:HL_5NDI_002 = 0HL_5NDI_002:HL_5NDH_001 = 0.1226HL_5NDI_002:HL_5VJ9_003 = 0.1215HL_5NDI_002:HL_4V9F_035 = 0.4976HL_5NDI_002:HL_5J7L_166 = 0.6368HL_5NDI_002:HL_4WF9_033 = 0.5351HL_5NDI_002:HL_7RQB_034 = 0.5877HL_5NDI_002:HL_7A0S_033 = 0.6245HL_5NDI_002:HL_5TBW_032 = 0.6872HL_5NDI_002:HL_5J7L_170 = 0.5672HL_5NDI_002:HL_7RQB_038 = 0.6131HL_5NDH_001:HL_7RQB_041 = 0.4669HL_5NDH_001:HL_5NDI_002 = 0.1226HL_5NDH_001:HL_5NDH_001 = 0HL_5NDH_001:HL_5VJ9_003 = 0.1088HL_5NDH_001:HL_4V9F_035 = 0.5114HL_5NDH_001:HL_5J7L_166 = 0.6705HL_5NDH_001:HL_4WF9_033 = 0.5359HL_5NDH_001:HL_7RQB_034 = 0.5849HL_5NDH_001:HL_7A0S_033 = 0.621HL_5NDH_001:HL_5TBW_032 = 0.6591HL_5NDH_001:HL_5J7L_170 = 0.5469HL_5NDH_001:HL_7RQB_038 = 0.599HL_5VJ9_003:HL_7RQB_041 = 0.4244HL_5VJ9_003:HL_5NDI_002 = 0.1215HL_5VJ9_003:HL_5NDH_001 = 0.1088HL_5VJ9_003:HL_5VJ9_003 = 0HL_5VJ9_003:HL_4V9F_035 = 0.4443HL_5VJ9_003:HL_5J7L_166 = 0.6056HL_5VJ9_003:HL_4WF9_033 = 0.4971HL_5VJ9_003:HL_7RQB_034 = 0.5494HL_5VJ9_003:HL_7A0S_033 = 0.5841HL_5VJ9_003:HL_5TBW_032 = 0.625HL_5VJ9_003:HL_5J7L_170 = 0.5235HL_5VJ9_003:HL_7RQB_038 = 0.5749HL_4V9F_035:HL_7RQB_041 = 0.5923HL_4V9F_035:HL_5NDI_002 = 0.4976HL_4V9F_035:HL_5NDH_001 = 0.5114HL_4V9F_035:HL_5VJ9_003 = 0.4443HL_4V9F_035:HL_4V9F_035 = 0HL_4V9F_035:HL_5J7L_166 = 0.2101HL_4V9F_035:HL_4WF9_033 = 0.1923HL_4V9F_035:HL_7RQB_034 = 0.2579HL_4V9F_035:HL_7A0S_033 = 0.268HL_4V9F_035:HL_5TBW_032 = 0.3456HL_4V9F_035:HL_5J7L_170 = 0.307HL_4V9F_035:HL_7RQB_038 = 0.3424HL_5J7L_166:HL_7RQB_041 = 0.6721HL_5J7L_166:HL_5NDI_002 = 0.6368HL_5J7L_166:HL_5NDH_001 = 0.6705HL_5J7L_166:HL_5VJ9_003 = 0.6056HL_5J7L_166:HL_4V9F_035 = 0.2101HL_5J7L_166:HL_5J7L_166 = 0HL_5J7L_166:HL_4WF9_033 = 0.2604HL_5J7L_166:HL_7RQB_034 = 0.2955HL_5J7L_166:HL_7A0S_033 = 0.2838HL_5J7L_166:HL_5TBW_032 = 0.4016HL_5J7L_166:HL_5J7L_170 = 0.4003HL_5J7L_166:HL_7RQB_038 = 0.3971HL_4WF9_033:HL_7RQB_041 = 0.6433HL_4WF9_033:HL_5NDI_002 = 0.5351HL_4WF9_033:HL_5NDH_001 = 0.5359HL_4WF9_033:HL_5VJ9_003 = 0.4971HL_4WF9_033:HL_4V9F_035 = 0.1923HL_4WF9_033:HL_5J7L_166 = 0.2604HL_4WF9_033:HL_4WF9_033 = 0HL_4WF9_033:HL_7RQB_034 = 0.0899HL_4WF9_033:HL_7A0S_033 = 0.1276HL_4WF9_033:HL_5TBW_032 = 0.2478HL_4WF9_033:HL_5J7L_170 = 0.1953HL_4WF9_033:HL_7RQB_038 = 0.2302HL_7RQB_034:HL_7RQB_041 = 0.6988HL_7RQB_034:HL_5NDI_002 = 0.5877HL_7RQB_034:HL_5NDH_001 = 0.5849HL_7RQB_034:HL_5VJ9_003 = 0.5494HL_7RQB_034:HL_4V9F_035 = 0.2579HL_7RQB_034:HL_5J7L_166 = 0.2955HL_7RQB_034:HL_4WF9_033 = 0.0899HL_7RQB_034:HL_7RQB_034 = 0HL_7RQB_034:HL_7A0S_033 = 0.0676HL_7RQB_034:HL_5TBW_032 = 0.2113HL_7RQB_034:HL_5J7L_170 = 0.2049HL_7RQB_034:HL_7RQB_038 = 0.2338HL_7A0S_033:HL_7RQB_041 = 0.7428HL_7A0S_033:HL_5NDI_002 = 0.6245HL_7A0S_033:HL_5NDH_001 = 0.621HL_7A0S_033:HL_5VJ9_003 = 0.5841HL_7A0S_033:HL_4V9F_035 = 0.268HL_7A0S_033:HL_5J7L_166 = 0.2838HL_7A0S_033:HL_4WF9_033 = 0.1276HL_7A0S_033:HL_7RQB_034 = 0.0676HL_7A0S_033:HL_7A0S_033 = 0HL_7A0S_033:HL_5TBW_032 = 0.2063HL_7A0S_033:HL_5J7L_170 = 0.2343HL_7A0S_033:HL_7RQB_038 = 0.251HL_5TBW_032:HL_7RQB_041 = 0.7942HL_5TBW_032:HL_5NDI_002 = 0.6872HL_5TBW_032:HL_5NDH_001 = 0.6591HL_5TBW_032:HL_5VJ9_003 = 0.625HL_5TBW_032:HL_4V9F_035 = 0.3456HL_5TBW_032:HL_5J7L_166 = 0.4016HL_5TBW_032:HL_4WF9_033 = 0.2478HL_5TBW_032:HL_7RQB_034 = 0.2113HL_5TBW_032:HL_7A0S_033 = 0.2063HL_5TBW_032:HL_5TBW_032 = 0HL_5TBW_032:HL_5J7L_170 = 0.2076HL_5TBW_032:HL_7RQB_038 = 0.2152HL_5J7L_170:HL_7RQB_041 = 0.695HL_5J7L_170:HL_5NDI_002 = 0.5672HL_5J7L_170:HL_5NDH_001 = 0.5469HL_5J7L_170:HL_5VJ9_003 = 0.5235HL_5J7L_170:HL_4V9F_035 = 0.307HL_5J7L_170:HL_5J7L_166 = 0.4003HL_5J7L_170:HL_4WF9_033 = 0.1953HL_5J7L_170:HL_7RQB_034 = 0.2049HL_5J7L_170:HL_7A0S_033 = 0.2343HL_5J7L_170:HL_5TBW_032 = 0.2076HL_5J7L_170:HL_5J7L_170 = 0HL_5J7L_170:HL_7RQB_038 = 0.1259HL_7RQB_038:HL_7RQB_041 = 0.7056HL_7RQB_038:HL_5NDI_002 = 0.6131HL_7RQB_038:HL_5NDH_001 = 0.599HL_7RQB_038:HL_5VJ9_003 = 0.5749HL_7RQB_038:HL_4V9F_035 = 0.3424HL_7RQB_038:HL_5J7L_166 = 0.3971HL_7RQB_038:HL_4WF9_033 = 0.2302HL_7RQB_038:HL_7RQB_034 = 0.2338HL_7RQB_038:HL_7A0S_033 = 0.251HL_7RQB_038:HL_5TBW_032 = 0.2152HL_7RQB_038:HL_5J7L_170 = 0.1259HL_7RQB_038:HL_7RQB_038 = 0HL_7RQB_041HL_5NDI_002HL_5NDH_001HL_5VJ9_003HL_4V9F_035HL_5J7L_166HL_4WF9_033HL_7RQB_034HL_7A0S_033HL_5TBW_032HL_5J7L_170HL_7RQB_038Discrepancy0.000.200.400.60
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