Motif HL_92304.2 Version HL_92304.2 of this group appears in releases 3.3 to 3.26
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 1-10 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5TBW_027 | 5TBW | 0.7078 | 1 | 1 | LSU rRNA | C | 1239 | A | 1240 | U | 1241 | G | 1242 | G | 1243 | A | 1244 | G | 1246 | U | 1247 | C | 1248 | G | 1249 | cWW | |
| 2 | HL_5J7L_161 | 5J7L | 0.1554 | 1 | DA | LSU rRNA | C | 1064 | U | 1065 | U | 1066 | A | 1067 | G | 1068 | A | 1069 | G | 1071 | C | 1072 | A | 1073 | G | 1074 | cWW | |
| 3 | HL_1MMS_001 | 1MMS | 0.0710 | 1 | C | 23S RIBOSOMAL RNA | C | 1064 | U | 1065 | U | 1066 | A | 1067 | G | 1068 | A | 1069 | G | 1071 | C | 1072 | A | 1073 | G | 1074 | cWW | |
| 4 | HL_5D8H_001 | 5D8H | 0.0000 | 1 | A | LSU rRNA | C | 1174 | U | 1175 | U | 1176 | A | 1177 | G | 1178 | A | 1179 | G | 1181 | C | 1182 | A | 1183 | G | 1184 | cWW | |
| 5 | HL_1HC8_001 | 1HC8 | 0.0708 | 1 | C | LSU rRNA | C | 114 | U | 115 | U | 116 | A | 117 | G | 118 | A | 119 | G | 121 | C | 122 | A | 123 | G | 124 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUUAGAAGCAG | 4 |
| CAUGGAAGUCG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUAGAAGCA | 4 |
| AUGGAAGUC | 1 |
Release history
| Release | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.11 | 3.12 | 3.13 | 3.14 | 3.15 | 3.16 | 3.17 | 3.18 | 3.19 | 3.20 | 3.21 | 3.22 | 3.23 | 3.24 | 3.25 | 3.26 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-10-19 | 2018-11-16 | 2018-12-14 | 2019-01-11 | 2019-02-08 | 2019-03-08 | 2019-04-05 | 2019-05-03 | 2019-05-31 | 2019-06-28 | 2019-07-26 | 2019-08-23 | 2019-09-19 | 2019-10-16 | 2019-11-13 | 2019-12-11 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
- Basepair signature
- cWW-cSW-R-R-tSH-R-R
- Heat map statistics
- Min 0.07 | Avg 0.28 | Max 0.71
Coloring options: