#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4 5 6 7 8 9 101-10
1 HL_5TBW_0275TBW0.680011 LSU rRNAC1239A1240U1241G1242G1243A1244G1246U1247C1248G1249cWW
2 HL_5J7L_1615J7L0.16131DA LSU rRNAC1064U1065U1066A1067G1068A1069G1071C1072A1073G1074cWW
3 HL_5D8H_0015D8H0.07101A LSU rRNAC1174U1175U1176A1177G1178A1179G1181C1182A1183G1184cWW
4 HL_1MMS_0011MMS0.00001C23S RIBOSOMAL RNAC1064U1065U1066A1067G1068A1069G1071C1072A1073G1074cWW
5 HL_6PRV_0016PRV0.08351A LSU rRNAC1064U1065U1066A1067G1068A1069G1071C1072A1073G1074cWW

3D structures

Complete motif including flanking bases
SequenceCounts
CUUAGAAGCAG4
CAUGGAAGUCG1
Non-Watson-Crick part of the motif
SequenceCounts
UUAGAAGCA4
AUGGAAGUC1

Release history

Release3.273.283.293.303.313.323.333.343.353.363.373.383.393.403.413.423.433.443.453.463.473.483.493.503.513.523.533.543.553.563.573.583.593.603.613.623.633.643.653.663.673.683.693.703.713.723.733.743.753.76
Date2020-01-082020-02-052020-03-042020-04-012020-04-292020-05-272020-06-242020-07-222020-08-192020-09-162020-10-142020-11-112020-12-092021-01-062021-02-032021-03-032021-03-312021-04-282021-05-262021-06-232021-07-212021-08-182021-09-152021-10-132021-11-102021-12-082022-01-052022-02-022022-03-022022-03-302022-04-272022-05-252022-06-222022-07-202022-08-172022-10-122022-11-092022-12-072023-01-042023-02-012023-03-012023-03-292023-04-262023-05-242023-06-212023-07-192023-08-162023-09-132023-10-112023-11-08
StatusUpdated, 1 parentExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (5)
  • Basepair signature
    cWW-cSW-R-R-tSH-R-R
    Heat map statistics
    Min 0.07 | Avg 0.28 | Max 0.71
    Help

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