Motif HL_98984.2 Version HL_98984.2 of this group appears in releases 3.80 to 3.84
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 1-3 | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3WQY_001 | 3WQY | 0.4417 | 6 | C | tRNA | C | 1613 | A | 1614 | G | 1622 | cWW | |
| 2 | HL_4V9K_033 | 4V9K | 0.3866 | 8 | AW | tRNA | C | 13 | A | 14 | G | 22 | cWW | |
| 3 | HL_6F4G_001 | 6F4G | 0.2572 | 10 | C | U2-SL4 | U | 8 | A | 9 | G | 20 | cWW | |
| 4 | HL_8G9Z_001 | 8G9Z | 0.0959 | 3 | E | Selenocysteine transfer RNA | G | 15||A | U | 16||A | C | 20||A|A | cWW | |
| 5 | HL_8GXB_002 | 8GXB | 0.0834 | 9 | B | NAD+ II riboswitch | C | 23 | A | 24 | G | 34 | cWW | |
| 6 | HL_7QR3_002 | 7QR3 | 0.1003 | 9 | C | chimpanzee CPEB3 ribozyme | C | 43 | A | 44 | G | 54 | cWW | |
| 7 | HL_7D7V_001 | 7D7V | 0.1700 | 9 | A | nadA RNA | C | 27 | A | 28 | G | 38 | cWW | |
| 8 | HL_4PKD_001 | 4PKD | 0.1661 | 9 | V | U1 snRNA stem-loops 1 and 2 (55-MER) | C | 64 | A | 65 | G | 75 | cWW | |
| 9 | HL_5DDP_002 | 5DDP | 0.1425 | 9 | A | glnA | C | 34 | A | 35 | G | 45 | cWW | |
| 10 | HL_6F4H_001 | 6F4H | 0.1231 | 9 | B | U1-SL2 | C | 6 | A | 7 | G | 17 | cWW | |
| 11 | HL_6F4H_002 | 6F4H | 0.1481 | 9 | D | U1-SL2 | C | 6 | A | 7 | G | 17 | cWW | |
| 12 | HL_7DLZ_001 | 7DLZ | 0.1183 | 9 | X | RNA (45-MER) | C | 18 | A | 19 | G | 29 | cWW | |
| 13 | HL_7VTI_001 | 7VTI | 0.0734 | 4 | B | crRNA | C | 15 | G | 16 | G | 21 | cWW | |
| 14 | HL_5DDO_002 | 5DDO | 0.1451 | 9 | A | L-glutamine riboswitch (58-MER) | C | 34 | A | 35 | G | 45 | cWW | |
| 15 | HL_5DDO_004 | 5DDO | 0.1635 | 9 | B | L-glutamine riboswitch (58-MER) | C | 34 | A | 35 | G | 45 | cWW | |
| 16 | HL_7QR4_002 | 7QR4 | 0.1277 | 9 | B | RNA CPEB3 ribozyme | C | 43 | A | 44 | G | 54 | cWW | |
| 17 | HL_1U6B_003 | 1U6B | 0.2709 | 9 | B | 197-MER | C | 1002 | A | 1003 | G | 1013 | cWW | |
| 18 | HL_3HHN_008 | 3HHN | 0.1764 | 9 | E | Class I ligase ribozyme, self-ligation product | C | 1004 | A | 1005 | G | 1015 | cWW | |
| 19 | HL_3CUL_002 | 3CUL | 0.1236 | 9 | C | RNA (92-MER) | C | 29 | A | 30 | G | 40 | cWW | |
| 20 | HL_8C3A_006 | 8C3A | 0.0000 | 2 | 1 | LSU rRNA | C | 207 | A | 208 | G | 211 | cWW | |
| 21 | HL_5TBW_006 | 5TBW | 0.0636 | 2 | 1 | LSU rRNA | C | 208 | A | 209 | G | 212 | cWW | |
| 22 | HL_8GXB_001 | 8GXB | 0.1212 | 9 | A | NAD+ II riboswitch | C | 23 | A | 24 | G | 34 | cWW | |
| 23 | HL_6LAX_001 | 6LAX | 0.0957 | 9 | A | RNA (55-MER) | C | 15 | A | 16 | G | 26 | cWW | |
| 24 | HL_4C4W_002 | 4C4W | 0.1197 | 9 | H | TSKT-23 | C | 11 | A | 12 | G | 22 | cWW | |
| 25 | HL_5FJ4_002 | 5FJ4 | 0.1097 | 9 | H | HMKT-7 | C | 11 | A | 12 | G | 22 | cWW | |
| 26 | HL_3G9C_005 | 3G9C | 0.1318 | 9 | Q | GLMS RIBOZYME | C | 17|||A | A | 17|||B | G | 17|||L | cWW | |
| 27 | HL_5AMQ_001 | 5AMQ | 0.2280 | 4 | C | RNA | U | 3 | A | 4 | A | 9 | cWW | |
| 28 | HL_3IWN_002 | 3IWN | 0.1358 | 9 | A | C-di-GMP riboswitch | C | 57 | A | 58 | G | 68 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAUUGCACUCCG | 18 |
| CAUUGCACCUCG | 2 |
| CAGCGGGAG | 1 |
| CAGUUGGUUAG | 1 |
| UAUUGCAGUACCG | 1 |
| GUGGUC | 1 |
| CGAUUUG | 1 |
| CACAG | 1 |
| CAUAG | 1 |
| UAGUGUA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUUGCACUCC | 18 |
| AUUGCACCUC | 2 |
| AGCGGGA | 1 |
| AGUUGGUUA | 1 |
| AUUGCAGUACC | 1 |
| UGGU | 1 |
| GAUUU | 1 |
| ACA | 1 |
| AUA | 1 |
| AGUGU | 1 |
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