#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 31-3
1 HL_3IWN_0023IWN0.13589 AC-di-GMP riboswitchC57A58G68cWW
2 HL_6DTD_0016DTD0.15994 CRNA (37-MER)C16U17G22cWW
3 HL_7QR4_0027QR40.12779 BRNA CPEB3 ribozymeC43A44G54cWW
4 HL_1U6B_0031U6B0.27099 B197-MERC1002A1003G1013cWW
5 HL_3HHN_0083HHN0.17649 EClass I ligase ribozyme, self-ligation productC1004A1005G1015cWW
6 HL_3CUL_0023CUL0.12369 CRNA (92-MER)C29A30G40cWW
7 HL_5DDO_0045DDO0.16359 BL-glutamine riboswitch (58-MER)C34A35G45cWW
8 HL_5DDO_0025DDO0.14519 AL-glutamine riboswitch (58-MER)C34A35G45cWW
9 HL_8G9Z_0018G9Z0.09593 ESelenocysteine transfer RNAG15||AU16||AC20||A|AcWW
10 HL_8GXB_0028GXB0.08349 BNAD+ II riboswitchC23A24G34cWW
11 HL_7QR3_0027QR30.10039 Cchimpanzee CPEB3 ribozymeC43A44G54cWW
12 HL_7DLZ_0017DLZ0.11839 XRNA (45-MER)C18A19G29cWW
13 HL_6F4H_0026F4H0.14819 DU1-SL2C6A7G17cWW
14 HL_6F4H_0016F4H0.12319 BU1-SL2C6A7G17cWW
15 HL_5DDP_0025DDP0.14259 A glnAC34A35G45cWW
16 HL_5AMQ_0015AMQ0.22804 CRNAU3A4A9cWW
17 HL_4PKD_0014PKD0.16619 VU1 snRNA stem-loops 1 and 2 (55-MER)C64A65G75cWW
18 HL_7D7V_0017D7V0.17009 AnadA RNAC27A28G38cWW
19 HL_8V1I_0048V1I0.11363 BmascRNAG10G11C16cWW
20 HL_8GXB_0018GXB0.12129 ANAD+ II riboswitchC23A24G34cWW
21 HL_6LAX_0016LAX0.09579 ARNA (55-MER)C15A16G26cWW
22 HL_4C4W_0024C4W0.11979 HTSKT-23C11A12G22cWW
23 HL_8JY0_0018JY00.08839 BRhoBASTC13A14G24cWW
24 HL_5FJ4_0025FJ40.10979 HHMKT-7C11A12G22cWW
25 HL_3G9C_0053G9C0.13189 QGLMS RIBOZYMEC17|||AA17|||BG17|||LcWW
26 HL_7VTI_0017VTI0.07344 BcrRNAC15G16G21cWW
27 HL_8C3A_0068C3A0.00002 1 LSU rRNAC207A208G211cWW
28 HL_5TBW_0065TBW0.06362 1 LSU rRNAC208A209G212cWW
29 HL_6F4G_0016F4G0.257210 CU2-SL4U8A9G20cWW
30 HL_4V9K_0334V9K0.38668 AW tRNAC13A14G22cWW
31 HL_3WQY_0013WQY0.44176 C tRNAC1613A1614G1622cWW

3D structures

Complete motif including flanking bases
SequenceCounts
CAUUGCACUCCG19
CAUUGCACCUCG2
CUUUUUG1
GUGGUC1
UAGUGUA1
GGUGGC1
CGAUUUG1
CACAG1
CAUAG1
UAUUGCAGUACCG1
CAGUUGGUUAG1
CAGCGGGAG1
Non-Watson-Crick part of the motif
SequenceCounts
AUUGCACUCC19
AUUGCACCUC2
UUUUU1
UGGU1
AGUGU1
GUGG1
GAUUU1
ACA1
AUA1
AUUGCAGUACC1
AGUUGGUUA1
AGCGGGA1

Release history

Release3.87
Date2024-08-14
StatusUpdated, 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
Basepair signature
cWW-F
Heat map statistics
Min 0.05 | Avg 0.28 | Max 0.93
Help

Coloring options:

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