Motif IL_04346.2 Version IL_04346.2 of this group appears in releases 3.3 to 3.11

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5		6		7		8	break		9		10		11		12		13		14		15	1-15	2-14	3-13	4-12	5-6	6-11	7-10	8-9
1	IL_4V8P_156	4V8P	0.2141	0	8x7 Sarcin-Ricin; G-bulge	C3	5S rRNA	G	71	U	72	U	73	A	74	G	75	U	76	A	77	C	78	*	G	98	G	99	A	100	A	101	G	102	U	103	C	104	cWW			tHH	ncSH	tWH	tHS	cWW
2	IL_4IOA_007	4IOA	0.1821	0	8x7 Sarcin-Ricin; G-bulge	X	LSU rRNA	G	215	U	216	U	217	A	218	G	219	U	220	A	221	G	222	*	C	230	G	231	A	232	A	233	C	234	C	235	C	236	cWW		tSH	tHH	cSH	tWH	tHS	cWW
3	IL_4WF9_009	4WF9	0.1441	0	8x7 Sarcin-Ricin; G-bulge	X	LSU rRNA	C	241	U	242	U	243	A	244	G	245	U	246	A	247	G	248	*	C	256	G	257	A	258	A	259	A	260	C	261	G	262	cWW		tSH	tHH	cSH	tWH	tHS	cWW
4	IL_4V8P_160	4V8P	0.1547	0	8x7 Sarcin-Ricin; G-bulge	D1	LSU rRNA	C	80	C	81	C	82	A	83	G	84	U	85	A	86	A	87	*	U	95	G	96	A	97	A	98	C	99	A	100	G	101	cWW	ncWW	tSH	tHH	cSH	tWH	tHS	cWW
5	IL_1Q96_001	1Q96	0.0000	0	8x7 Sarcin-Ricin; G-bulge	A	sarcin/ricin 28S rRNA	C	6	U	7	C	8	A	9	G	10	U	11	A	12	U	13	*	A	18	G	19	A	20	A	21	C	22	C	23	G	24	cWW		tSH		cSH	tWH	tHS	cWW
6	IL_1JBR_001	1JBR	0.0890	0	8x7 Sarcin-Ricin; G-bulge	C+F	RNA (18-mer) + RNA (13-mer)	C	6	U	7	C	8	A	9	G	10	U	11	A	12	C	13	*	G	18	G	19	A	20	A	21	C	22	C	23	G	24	cWW		tSH	tHH	cSH	tWH	tHS	cWW
7	IL_5TBW_116	5TBW	0.1518	0	8x7 Sarcin-Ricin; G-bulge	1	LSU rRNA	C	3018	U	3019	U	3020	A	3021	G	3022	U	3023	A	3024	C	3025	*	G	3030	G	3031	A	3032	A	3033	C	3034	A	3035	G	3036	cWW		tSH	tHH	cSH	tWH	tHS	cWW
8	IL_4V8P_276	4V8P	0.1943	0	8x7 Sarcin-Ricin; G-bulge	D1	LSU rRNA	G	3007	U	3008	U	3009	A	3010	G	3011	U	3012	A	3013	C	3014	*	G	3019	G	3020	A	3021	A	3022	C	3023	A	3024	C	3025	cWW		ntSH	tHH		tWH	tHS	cWW
9	IL_5J7L_250	5J7L	0.1868	0	8x7 Sarcin-Ricin; G-bulge	DA	LSU rRNA	C	201	U	202	A	203	A	204	G	205	U	206	A	207	C	208	*	G	188	G	189	A	190	A	191	C	192	U	193	G	194	cWW	cwW	tSH	tHH	cSH	tWH	tHS	cWW
10	IL_4V9F_006	4V9F	0.1981	0	8x7 Sarcin-Ricin; G-bulge	0	LSU rRNA	C	171	U	172	C	173	A	174	G	175	U	176	A	177	U	178	*	A	158	G	159	A	160	A	161	C	162	U	163	G	164	cWW	cwW	tSH	tHH	cSH	tWH	tHS	cWW
11	IL_4Y4O_184	4Y4O	0.1740	0	8x7 Sarcin-Ricin; G-bulge	2A	LSU rRNA	C	201	U	202	C	203	A	204	G	205	U	206	A	207	C	208	*	G	188	G	189	A	190	A	191	C	192	U	193	G	194	cWW	cwW	tSH	tHH	cSH	tWH	tHS	cWW
12	IL_4IOA_006	4IOA	0.2008	0	8x7 Sarcin-Ricin; G-bulge	X	LSU rRNA	C	178	U	179	C	180	A	181	G	182	U	183	A	184	C	185	*	G	165	G	166	A	167	A	168	C	169	U	170	G	171	cWW	cwW	ntSH	tHH	cSH	tWH	tHS	cWW
13	IL_5TBW_377	5TBW	0.2638	1	8x7 Sarcin-Ricin; G-bulge	AS	5S rRNA	A	72	C	74	G	75	A	76	G	77	U	78	A	79	G	80	*	C	100	G	101	A	102	A	103	A	104	C	105	U	106	cWW	cWw	tSH	tHH	cSH	tWH	tHS	cWW
14	IL_5J7L_289	5J7L	0.2775	0	8x7 Sarcin-Ricin; G-bulge	DA	LSU rRNA	A	1262	U	1263	A	1264	A	1265	G	1266	U	1267	A	1268	A	1269	*	U	2011	G	2012	A	2013	A	2014	A	2015	U	2016	U	2017	cWW	cwW	tSH	tHH	cSH	tWH	tHS	cWW
15	IL_4Y4O_225	4Y4O	0.2703	0	8x7 Sarcin-Ricin; G-bulge	2A	LSU rRNA	A	1262	U	1263	G	1264	A	1265	G	1266	U	1267	A	1268	A	1269	*	U	2011	G	2012	A	2013	A	2014	A	2015	U	2016	U	2017	cWW	cwW	tSH	tHH	cSH	tWH	tHS	cWW
16	IL_4IOA_047	4IOA	0.3485	0	8x7 Sarcin-Ricin; G-bulge	X	LSU rRNA	A	1275	U	1276	G	1277	A	1278	G	1279	U	1280	A	1281	A	1282	*	U	1994	G	1995	A	1996	A	1997	A	1998	U	1999	U	2000	cWW	cwW	tSH		cSH	tWH	tHS	cWW
17	IL_4WF9_048	4WF9	0.3587	0	8x7 Sarcin-Ricin; G-bulge	X	LSU rRNA	G	1300	U	1301	G	1302	A	1303	G	1304	U	1305	A	1306	G	1307	*	U	2038	G	2039	A	2040	A	2041	A	2042	U	2043	C	2044	cWW	cwW	tSH	tHH	ncSW		tHS	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CUCAGUAC*GGAACUG	2
AUGAGUAA*UGAAAUU	2
GUUAGUAC*GGAAGUC	1
GUUAGUAG*CGAACCC	1
CUUAGUAG*CGAAACG	1
CCCAGUAA*UGAACAG	1
CUCAGUAU*AGAACCG	1
CUCAGUAC*GGAACCG	1
CUUAGUAC*GGAACAG	1
GUUAGUAC*GGAACAC	1
CUAAGUAC*GGAACUG	1
CUCAGUAU*AGAACUG	1
ACCGAGUAG*CGAAACU	1
AUAAGUAA*UGAAAUU	1
GUGAGUAG*UGAAAUC	1

Non-Watson-Crick part of the motif

Sequence	Counts
UCAGUA*GAACU	3
UGAGUA*GAAAU	3
UCAGUA*GAACC	2
UUAGUA*GAACA	2
UUAGUA*GAAGU	1
UUAGUA*GAACC	1
UUAGUA*GAAAC	1
CCAGUA*GAACA	1
UAAGUA*GAACU	1
CCGAGUA*GAAAC	1
UAAGUA*GAAAU	1

Release history

Release	3.3	3.4	3.5	3.6	3.7	3.8	3.9	3.10	3.11
Date	2018-03-08	2018-04-06	2018-05-04	2018-06-01	2018-06-29	2018-07-27	2018-08-24	2018-09-21	2018-10-19
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: 8x7 Sarcin-Ricin; G-bulge (17)
Basepair signature: cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
Heat map statistics: Min 0.06 | Avg 0.24 | Max 0.37

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Coloring options: Nucleotide numbers

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