Motif IL_05641.1 Version IL_05641.1 of this group appears in releases 1.14 to 1.15
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 1-20 | 2-19 | 4-9 | 5-8 | 6-7 | 15-18 | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4IOA_036 | 4IOA | 0.0000 | 3 | X | LSU rRNA | G | 1035 | G | 1036 | U | 1038 | A | 1039 | A | 1040 | G | 1041 | * | C | 1135 | G | 1136 | A | 1137 | A | 1139 | A | 1140 | G | 1142 | A | 1143 | U | 1144 | C | 1145 | G | 1146 | G | 1147 | G | 1148 | G | 1149 | C | 1150 | cWW | tWW | tHH | tHS | cWW | ntWH | |
| 2 | IL_4NVV_042 | 4NVV | 0.1228 | 3 | A | 23S Ribosomal RNA | G | 1070 | G | 1071 | A | 1073 | A | 1074 | A | 1075 | G | 1076 | * | C | 1170 | G | 1171 | A | 1172 | A | 1174 | A | 1175 | G | 1177 | A | 1178 | U | 1179 | C | 1180 | G | 1181 | G | 1182 | G | 1183 | G | 1184 | C | 1185 | cWW | tWW | tHH | tHS | cWW | ntWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGUUAAG*CGAAAAUGAUCGGGGC | 1 |
| GGUAAAG*CGAAAAUGAUCGGGGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUUAA*GAAAAUGAUCGGGG | 1 |
| GUAAA*GAAAAUGAUCGGGG | 1 |
Release history
Parent motifs
| Parent motif | Common motif instances | Only in IL_05641.1 | Only in the parent motif |
|---|---|---|---|
| IL_33964.1 Compare | IL_4IOA_036 | IL_4NVV_042 | IL_3V2F_040 |
Children motifs
| Child motif | Common motif instances | Only in IL_05641.1 | Only in the child motif |
|---|---|---|---|
| IL_74462.1 Compare | IL_4IOA_036 | IL_4NVV_042 | IL_4QCN_039 |
- Annotations
- Basepair signature
- cWW-tWW-L-tWH-R-R-R-R-R-R-R-tHH-tHS-cWW
- Heat map statistics
- Min 0.12 | Avg 0.06 | Max 0.12
Coloring options: