#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4 5 6break 7 8 9 10 11 12 13 14 15 16 17 18 19 201-202-194-95-86-7
1 IL_3V2F_0403V2F0.00003A23S Ribosomal RNAG1024G1025A1027A1028A1029G1030*C1124G1125A1126A1128A1129G1131A1132U1133C1135G1136G1137G1138G1139C1140cWWtWWtHHtHScWW
2 IL_4IOA_0364IOA0.12583X LSU rRNAG1035G1036U1038A1039A1040G1041*C1135G1136A1137A1139A1140G1142A1143U1144C1145G1146G1147G1148G1149C1150cWWtWWtHHtHScWW

3D structures

Complete motif including flanking bases
SequenceCounts
GGUAAAG*CGAAAAUGAUCGGGGC1
GGUUAAG*CGAAAAUGAUCGGGGC1
Non-Watson-Crick part of the motif
SequenceCounts
GUAAA*GAAAAUGAUCGGGG1
GUUAA*GAAAAUGAUCGGGG1

Release history

Release1.11.21.31.41.51.61.71.81.91.101.111.121.13
Date2013-04-082013-05-042013-06-012013-07-012013-08-032013-08-312013-09-282013-11-052013-12-072014-01-042014-02-012014-03-012014-03-29
StatusNew id, 1 parentExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

Parent motifCommon motif instancesOnly in IL_33964.1Only in the parent motif
IL_90880.1
Compare
IL_3V2F_040IL_4IOA_036

Children motifs

Child motifCommon motif instancesOnly in IL_33964.1Only in the child motif
IL_05641.1
Compare
IL_4IOA_036IL_3V2F_040IL_4NVV_042
Annotations
  • (2)
  • Basepair signature
    cWW-tWW-L-tWH-R-R-R-R-R-R-R-tHH-tHS-cWW
    Heat map statistics
    Min 0.13 | Avg 0.06 | Max 0.13
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