Motif IL_33964.1 Version IL_33964.1 of this group appears in releases 1.1 to 1.13
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 1-20 | 2-19 | 4-9 | 5-8 | 6-7 | ||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_3V2F_040 | 3V2F | 0.0000 | 3 | A | 23S Ribosomal RNA | G | 1024 | G | 1025 | A | 1027 | A | 1028 | A | 1029 | G | 1030 | * | C | 1124 | G | 1125 | A | 1126 | A | 1128 | A | 1129 | G | 1131 | A | 1132 | U | 1133 | C | 1135 | G | 1136 | G | 1137 | G | 1138 | G | 1139 | C | 1140 | cWW | tWW | tHH | tHS | cWW |
2 | IL_4IOA_036 | 4IOA | 0.1258 | 3 | X | LSU rRNA | G | 1035 | G | 1036 | U | 1038 | A | 1039 | A | 1040 | G | 1041 | * | C | 1135 | G | 1136 | A | 1137 | A | 1139 | A | 1140 | G | 1142 | A | 1143 | U | 1144 | C | 1145 | G | 1146 | G | 1147 | G | 1148 | G | 1149 | C | 1150 | cWW | tWW | tHH | tHS | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
GGUAAAG*CGAAAAUGAUCGGGGC | 1 |
GGUUAAG*CGAAAAUGAUCGGGGC | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
GUAAA*GAAAAUGAUCGGGG | 1 |
GUUAA*GAAAAUGAUCGGGG | 1 |
Release history
Release | 1.1 | 1.2 | 1.3 | 1.4 | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Date | 2013-04-08 | 2013-05-04 | 2013-06-01 | 2013-07-01 | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-05 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 |
Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
Parent motif | Common motif instances | Only in IL_33964.1 | Only in the parent motif |
---|---|---|---|
IL_90880.1 Compare | IL_3V2F_040 | IL_4IOA_036 |
Children motifs
Child motif | Common motif instances | Only in IL_33964.1 | Only in the child motif |
---|---|---|---|
IL_05641.1 Compare | IL_4IOA_036 | IL_3V2F_040 | IL_4NVV_042 |
- Annotations
-
- (2)
- Basepair signature
- cWW-tWW-L-tWH-R-R-R-R-R-R-R-tHH-tHS-cWW
- Heat map statistics
- Min 0.13 | Avg 0.06 | Max 0.13
Coloring options: