Motif IL_08926.1 Version IL_08926.1 of this group appears in releases 0.7 to 1.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 5 | 1-5 | 2-3 | 4-5 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3V2F_069 | 3V2F | 0.7195 | 1 | A | 23S Ribosomal RNA | U | 1841 | G | 1842 | * | U | 1898 | G | 1899 | A | 1901 | cWW | cWW | ||
| 2 | IL_3V2F_093 | 3V2F | 0.1096 | 0 | A | 23S Ribosomal RNA | C | 2507 | G | 2508 | * | U | 2580 | G | 2581 | G | 2582 | cWW | cWW | chH | |
| 3 | IL_3U5H_113 | 3U5H | 0.0933 | 0 | 5 | 25S rRNA | C | 2876 | G | 2877 | * | U | 2949 | G | 2950 | G | 2951 | cWW | cWW | nchH | |
| 4 | IL_1S72_084 | 1S72 | 0.0000 | 0 | Major groove platform (H) | 0 | LSU rRNA | C | 2542 | G | 2543 | * | U | 2615 | G | 2616 | G | 2617 | cWW | cWW | nchH |
| 5 | IL_1S72_081 | 1S72 | 0.3637 | 0 | Major groove platform (H) | 0 | LSU rRNA | U | 2528 | G | 2529 | * | U | 2492 | C | 2493 | G | 2494 | cWW | cWW | cHH |
| 6 | IL_3U5H_110 | 3U5H | 0.4278 | 0 | 5 | 25S rRNA | U | 2862 | G | 2863 | * | U | 2826 | U | 2827 | G | 2828 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CG*UGG | 3 |
| UG*UGAA | 1 |
| UG*UCG | 1 |
| UG*UUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *G | 3 |
| *GA | 1 |
| *C | 1 |
| *U | 1 |
Release history
| Release | 0.7 | 0.8 | 0.9 | 0.10 | 0.11 | 0.12 | 1.0 |
|---|---|---|---|---|---|---|---|
| Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_08926.1 | Only in the parent motif |
|---|---|---|---|
| IL_11594.1 Compare | IL_1S72_081, IL_3U5H_113, IL_1S72_084 | IL_3V2F_069, IL_3U5H_110, IL_3V2F_093 | IL_3UXR_069 |
| IL_99515.1 Compare | IL_3U5H_110 | IL_3V2F_069, IL_1S72_081, IL_3V2F_093, IL_3U5H_113, IL_1S72_084 | IL_2ZJR_023, IL_3U5H_117, IL_2QBG_098, IL_2ZJR_092, IL_3U5H_085, IL_1S72_087, IL_4A1B_114, IL_1S72_062, IL_4A1B_081, IL_3UXR_097 |
Children motifs
| Child motif | Common motif instances | Only in IL_08926.1 | Only in the child motif |
|---|---|---|---|
| IL_08926.2 Compare | IL_3U5H_110, IL_3U5H_113, IL_3V2F_093, IL_1S72_081, IL_1S72_084 | IL_3V2F_069 | |
| IL_28947.1 Compare | IL_3V2F_069 | IL_3U5H_110, IL_3U5H_113, IL_3V2F_093, IL_1S72_081, IL_1S72_084 | IL_2QBG_086, IL_2NZ4_007, IL_4IOA_067, IL_1S72_042, IL_1U9S_008, IL_387D_001, IL_2QBG_060, IL_3U5H_063, IL_1FJG_005, IL_1S72_022, IL_1XOK_001, IL_4A1B_063, IL_1XOK_002, IL_3V2F_107, IL_1S72_099, IL_3U5H_137, IL_4FAW_014, IL_2AW7_005, IL_3V2F_059, IL_3U5H_019 |
- Annotations
-
- (4)
- Major groove platform (H) (2)
- Basepair signature
- cWW-cHH-cWW
- Heat map statistics
- Min 0.09 | Avg 0.36 | Max 0.78
Coloring options: