#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4 5 6break 7 8 9 101-102-96-7
1 IL_1NUJ_0011NUJ0.00000A+BRNA (13-mer) + RNA (11-mer)C22C23G24A25G26C27*G43G44A45G46cWWncWWcWW
2 IL_1NUJ_0041NUJ0.02270G+HRNA (13-mer) + RNA (11-mer)C22C23G24A25G26C27*G43G44A45G46cWWncWWcWW
3 IL_429D_001429D0.16610A+BRNA (13-mer) + RNA (11-mer)C22C23G24A25G26C27*G43G44A45G46cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CCGAGC*GGAG3
Non-Watson-Crick part of the motif
SequenceCounts
CGAG*GA3

Release history

Release0.30.4
Date2011-12-082011-12-08
StatusNew id, 2 parentsExact match

Parent motifs

Children motifs

Child motifCommon motif instancesOnly in IL_08960.1Only in the child motif
IL_68211.1
Compare
IL_1NUJ_004, IL_429D_001, IL_1NUJ_001IL_3LOA_001, IL_2XZM_041, IL_429D_002, IL_1NUJ_002, IL_1NUJ_003
Annotations
  • (3)
  • Basepair signature
    Heat map statistics
    Min 0.02 | Avg 0.08 | Max 0.17
    Help

    Coloring options:

    Copyright 2025 BGSU RNA group. Page generated in 0.4329 s