Motif IL_08960.1 Version IL_08960.1 of this group appears in releases 0.3 to 0.4
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 1-10 | 2-9 | 6-7 | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_1NUJ_001 | 1NUJ | 0.0000 | 0 | A+B | RNA (13-mer) + RNA (11-mer) | C | 22 | C | 23 | G | 24 | A | 25 | G | 26 | C | 27 | * | G | 43 | G | 44 | A | 45 | G | 46 | cWW | ncWW | cWW |
2 | IL_1NUJ_004 | 1NUJ | 0.0227 | 0 | G+H | RNA (13-mer) + RNA (11-mer) | C | 22 | C | 23 | G | 24 | A | 25 | G | 26 | C | 27 | * | G | 43 | G | 44 | A | 45 | G | 46 | cWW | ncWW | cWW |
3 | IL_429D_001 | 429D | 0.1661 | 0 | A+B | RNA (13-mer) + RNA (11-mer) | C | 22 | C | 23 | G | 24 | A | 25 | G | 26 | C | 27 | * | G | 43 | G | 44 | A | 45 | G | 46 | cWW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CCGAGC*GGAG | 3 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
CGAG*GA | 3 |
Release history
Parent motifs
Parent motif | Common motif instances | Only in IL_08960.1 | Only in the parent motif |
---|---|---|---|
IL_36381.2 Compare | IL_1NUJ_004, IL_1NUJ_001 | IL_429D_001 | IL_3MEI_004, IL_1NUJ_003, IL_1NUJ_002, IL_1S72_053 |
IL_71076.1 Compare | IL_429D_001 | IL_1NUJ_004, IL_1NUJ_001 |
Children motifs
Child motif | Common motif instances | Only in IL_08960.1 | Only in the child motif |
---|---|---|---|
IL_68211.1 Compare | IL_1NUJ_004, IL_429D_001, IL_1NUJ_001 | IL_3LOA_001, IL_2XZM_041, IL_429D_002, IL_1NUJ_002, IL_1NUJ_003 |
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