Motif IL_68211.1 Version IL_68211.1 of this group appears in releases 0.5 to 0.5
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 1-9 | 2-8 | 4-7 | 5-6 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_429D_002 | 429D | 0.0000 | 1 | C+D | RNA (13-mer) + RNA (11-mer) | C | 122 | C | 123 | A | 125 | G | 126 | C | 127 | * | G | 143 | G | 144 | A | 145 | G | 146 | cWW | ncWW | cWW | ||
| 2 | IL_1NUJ_003 | 1NUJ | 0.0740 | 1 | E+F | RNA (13-mer) + RNA (11-mer) | C | 22 | C | 23 | A | 25 | G | 26 | C | 27 | * | G | 43 | G | 44 | A | 45 | G | 46 | cWW | ncWW | cWW | ||
| 3 | IL_1NUJ_002 | 1NUJ | 0.0765 | 1 | C+D | RNA (13-mer) + RNA (11-mer) | C | 22 | C | 23 | A | 25 | G | 26 | C | 27 | * | G | 43 | G | 44 | A | 45 | G | 46 | cWW | ncWW | cWW | ||
| 4 | IL_429D_001 | 429D | 0.3527 | 1 | A+B | RNA (13-mer) + RNA (11-mer) | C | 22 | C | 23 | A | 25 | G | 26 | C | 27 | * | G | 43 | G | 44 | A | 45 | G | 46 | cWW | cWW | |||
| 5 | IL_1NUJ_004 | 1NUJ | 0.4090 | 1 | G+H | RNA (13-mer) + RNA (11-mer) | C | 22 | C | 23 | A | 25 | G | 26 | C | 27 | * | G | 43 | G | 44 | A | 45 | G | 46 | cWW | ncWW | cWW | ||
| 6 | IL_1NUJ_001 | 1NUJ | 0.4183 | 1 | A+B | RNA (13-mer) + RNA (11-mer) | C | 22 | C | 23 | A | 25 | G | 26 | C | 27 | * | G | 43 | G | 44 | A | 45 | G | 46 | cWW | ncWW | cWW | ||
| 7 | IL_2XZM_041 | 2XZM | 0.9299 | 1 | A | 18S RRNA | G | 784 | G | 785 | A | 787 | U | 788 | A | 789 | * | U | 728 | U | 729 | A | 730 | C | 731 | cWW | ncWW | ncWw | cWW | |
| 8 | IL_3LOA_001 | 3LOA | 0.9664 | 0 | UAA/GAN variation | B+A | RNA (23-mer) | G | 1497 | U | 1498 | A | 1499 | A | 1500 | C | 1501 | * | G | 1401 | C | 1402 | C | 1403 | C | 1404 | cWW | ncWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCGAGC*GGAG | 6 |
| GGAAUA*UUAC | 1 |
| GUAAC*GCCC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CGAG*GA | 6 |
| GAAU*UA | 1 |
| UAA*CC | 1 |
Release history
| Release | 0.5 |
|---|---|
| Date | 2011-12-08 |
| Status | > 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_68211.1 | Only in the parent motif |
|---|---|---|---|
| IL_08960.1 Compare | IL_1NUJ_004, IL_429D_001, IL_1NUJ_001 | IL_3LOA_001, IL_2XZM_041, IL_429D_002, IL_1NUJ_002, IL_1NUJ_003 | |
| IL_77567.1 Compare | IL_1NUJ_002, IL_1NUJ_003 | IL_3LOA_001, IL_429D_001, IL_429D_002, IL_1NUJ_001, IL_2XZM_041, IL_1NUJ_004 | |
| IL_70339.1 Compare | IL_429D_002 | IL_3LOA_001, IL_429D_001, IL_1NUJ_001, IL_1NUJ_002, IL_1NUJ_003, IL_2XZM_041, IL_1NUJ_004 | IL_2O3Y_002 |
| IL_10358.1 Compare | IL_3LOA_001 | IL_429D_001, IL_429D_002, IL_1NUJ_001, IL_1NUJ_002, IL_1NUJ_003, IL_2XZM_041, IL_1NUJ_004 | IL_3G78_010, IL_3BNT_005, IL_1GID_010, IL_1GID_003, IL_3BNT_002 |
Children motifs
| Child motif | Common motif instances | Only in IL_68211.1 | Only in the child motif |
|---|---|---|---|
| IL_40239.1 Compare | IL_429D_001, IL_429D_002 | IL_3LOA_001, IL_1NUJ_004, IL_1NUJ_001, IL_1NUJ_002, IL_1NUJ_003, IL_2XZM_041 | IL_1NUV_001, IL_1NUV_002, IL_1NUV_003, IL_1NUV_004, IL_2AW7_010, IL_1FJG_008 |
| IL_31555.1 Compare | IL_3LOA_001, IL_2XZM_041 | IL_1NUJ_004, IL_429D_002, IL_1NUJ_001, IL_1NUJ_002, IL_1NUJ_003, IL_429D_001 | IL_3BNQ_008, IL_1GID_010, IL_4A1B_026, IL_2XZM_039, IL_1X8W_002, IL_3BNT_002, IL_4A1B_022, IL_3FS0_001, IL_3BNT_005, IL_3FTM_002, IL_3G78_010, IL_3FTM_001, IL_3BNQ_002, IL_4A1B_120, IL_1GID_003 |
- Annotations
-
- (7)
- UAA/GAN variation (1)
- Basepair signature
- Heat map statistics
- Min 0.01 | Avg 0.45 | Max 0.97
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