Motif IL_10484.1 Version IL_10484.1 of this group appears in releases 3.77 to 3.99
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | 4-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3PDR_003 | 3PDR | 0.0000 | 1 | Double sheared | X | M-box riboswitch (ykoK leader) | U | 28 | G | 29 | A | 30 | G | 31 | * | U | 153 | A | 154 | A | 156 | G | 157 | cWW | tSH | tHS | cWW |
| 2 | IL_6E7L_002 | 6E7L | 0.3397 | 0 | Double sheared | A | RNA (22-mer) | U | 10 | U | 11 | C | 12 | G | 13 | * | U | 10||||7_375 | U | 11||||7_375 | C | 12||||7_375 | G | 13||||7_375 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGAG*UAAAG | 1 |
| UUCG*UUCG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GA*AAA | 1 |
| UC*UC | 1 |
Release history
| Release | 3.77 | 3.78 | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 | 3.88 | 3.89 | 3.90 | 3.91 | 3.92 | 3.93 | 3.94 | 3.95 | 3.96 | 3.97 | 3.98 | 3.99 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2023-12-06 | 2024-01-03 | 2024-01-03 | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 | 2024-08-14 | 2024-09-11 | 2024-10-09 | 2024-11-06 | 2024-12-04 | 2025-01-01 | 2025-01-29 | 2025-02-26 | 2025-03-26 | 2025-04-23 | 2025-05-21 | 2025-06-18 | 2025-07-16 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Double sheared (2)
- Basepair signature
- cWW-tSH-tHS-cWW
- Heat map statistics
- Min 0.34 | Avg 0.17 | Max 0.34
Coloring options: