IL_11156.1

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2	break		3		4		5	1-4	1-5	2-3
1	IL_4V8P_175	4V8P	0.5417	0		D1	LSU rRNA	U	511	G	512	*	U	466	A	467	A	468		cWW	cWW
2	IL_4Y4O_266	4Y4O	0.4562	0		2A	LSU rRNA	A	2453	G	2454	*	C	2498	C	2499	U	2500		cWW	cWW
3	IL_4IOA_085	4IOA	0.4161	0		X	LSU rRNA	A	2432	G	2433	*	C	2477	C	2478	U	2479		cWW	cWW
4	IL_4WF9_089	4WF9	0.3645	0	Single stack bend	X	LSU rRNA	A	2480	G	2481	*	C	2525	C	2526	U	2527		cWW	cWW
5	IL_4V8P_199	4V8P	0.4023	0	Single stack bend (H)	D1	LSU rRNA	C	994	A	995	*	U	1138	A	1139	G	1140		cWW	cWW
6	IL_4V9F_005	4V9F	0.2110	0	Single stack bend	0	LSU rRNA	C	153	C	154	*	G	182	A	183	G	184		cWW	cWW
7	IL_4WF9_028	4WF9	0.2323	0	Single stack bend	X	LSU rRNA	C	882	C	883	*	G	984	A	985	G	986		cWW	cWW
8	IL_4Y4O_201	4Y4O	0.1810	0	Single stack bend (H)	2A	LSU rRNA	C	837	C	838	*	G	940	A	941	G	942		cWW	cWW
9	IL_4IOA_021	4IOA	0.1947	0	Single stack bend (H)	X	LSU rRNA	C	850	C	851	*	G	951	A	952	G	953		cWW	cWW
10	IL_5J7L_266	5J7L	0.1750	0	Single stack bend	DA	LSU rRNA	C	837	C	838	*	G	940	A	941	G	942		ncWW	cWW
11	IL_4V8P_158	4V8P	0.1419	0	Single stack bend (H)	D1	LSU rRNA	C	25	C	26	*	G	54	A	55	G	56		cWW	cWW
12	IL_4IOA_005	4IOA	0.0000	0	Single stack bend (H)	X	LSU rRNA	C	160	U	161	*	A	189	A	190	G	191		cWW	cWW
13	IL_4Y4O_183	4Y4O	0.1205	0	Single stack bend (H)	2A	LSU rRNA	C	183	C	184	*	G	212	A	213	G	214		cWW	cWW
14	IL_4WF9_007	4WF9	0.1289	0	Single stack bend	X	LSU rRNA	C	186	C	187	*	G	215	A	216	G	217		cWW	cWW
15	IL_5J7L_249	5J7L	0.1978	0	Single stack bend	DA	LSU rRNA	C	183	C	184	*	G	212	A	213	G	214		cWW	cWW
16	IL_4V9F_081	4V9F	0.2417	0	Single stack bend	0	LSU rRNA	C	2454	A	2455	*	U	2436	A	2437	G	2438		cWW	cWW
17	IL_4IOA_056	4IOA	0.2810	0	Single stack bend (H)	X	LSU rRNA	C	1477	U	1478	*	A	1463	A	1464	G	1465	ncWW	cWW	cWW
18	IL_5J7L_032	5J7L	0.2973	0	Single stack bend	AA	SSU rRNA	C	658	U	659	*	A	746	A	747	G	748		cWW	cWW
19	IL_5J7L_044	5J7L	0.3734	0	Single stack bend	AA	SSU rRNA	C	998	C	999	*	G	1041	A	1042	G	1043		cWW	cWW
20	IL_5J7L_269	5J7L	0.3791	0	Single stack bend	DA	LSU rRNA	U	850	C	851	*	G	926	A	927	A	928		cWW	cWW
21	IL_4LFB_041	4LFB	0.4135	0	Single stack bend	A	SSU rRNA	C	1038	C	1039	*	G	1002	G	1003	G	1003\|\|\|A		cWW	cWW
22	IL_4V8P_231	4V8P	0.3899	0		D1	LSU rRNA	C	1694	A	1695	*	U	1802	U	1803	G	1804		cWW	cWW
23	IL_4V83_236	4V83	0.3965	0	Single stack bend	CV	domain 3 of PSIC IGR IRES RNA	U	6172	G	6173	*	C	6155	A	6156	A	6157		cWW	cWW
24	IL_2ET8_001	2ET8	0.3770	1	Stack and bulge	A+B	RNA (22-mer)	G	4	C	6	*	G	41	U	42	C	43		cWW	cWW
25	IL_2O3X_001	2O3X	0.3613	1	Stack and bulge	A+B	RNA (23-mer)	G	5	C	7	*	G	42	U	43	C	44		cWW	cWW
26	IL_4WF9_047	4WF9	0.3221	1	Intercalated cWW	X	LSU rRNA	G	1257	U	1259	*	G	1266	A	1267	C	1268		cWW	cWW
27	IL_4IOA_046	4IOA	0.4993	1	Intercalated cWW (H)	X	LSU rRNA	U	1232	C	1234	*	G	1241	A	1242	G	1243		cWW	cWW
28	IL_4IOA_102	4IOA	0.7491	2	Decoding loop related (H)	X	LSU rRNA	G	2846	C	2849	*	G	2818	G	2819	C	2820		cWW	cWW
29	IL_2O3X_003	2O3X	0.5754	2	Decoding loop related	A+B	RNA (23-mer)	G	16	G	19	*	C	30	A	31	C	32		cWW	cWW
30	IL_1ZX7_005	1ZX7	0.5047	2	Decoding loop related	E+F	RNA (15-mer) + RNA (14-mer)	G	7	G	10	*	C	26	A	27	C	28		cWW	cWW
31	IL_1ZX7_003	1ZX7	0.5867	2	Decoding loop related	C+D	RNA (15-mer) + RNA (14-mer)	G	7	G	10	*	C	26	A	27	C	28		cWW	cWW
32	IL_1T0E_001	1T0E	0.6309	2	Decoding loop related	A+C	RNA (18-mer) + RNA (17-mer)	G	7	G	10\|\|A	*	C	16	A	17	C	18		cWW	cWW
33	IL_2ET8_002	2ET8	0.7154	2	Decoding loop related	B+A	RNA (22-mer)	G	38	G	41	*	C	6	A	7	C	8		cWW	cWW
34	IL_2O3X_002	2O3X	0.7253	2	Decoding loop related	B+A	RNA (23-mer)	G	39	G	42	*	C	7	A	8	C	9		cWW	cWW
35	IL_2PWT_003	2PWT	0.7563	2		A+B	22-mer of the ribosomal decoding site	G	15	G	18	*	C	28	A	29	C	30		cWW	cWW
36	IL_2PWT_002	2PWT	0.7632	2		B+A	22-mer of the ribosomal decoding site	G	37	G	40	*	C	6	A	7	C	8		cWW	cWW
37	IL_1ZZ5_001	1ZZ5	0.7648	2	Decoding loop related	A+B	RNA (15-mer) + RNA (14-mer)	G	7	G	10	*	C	26	A	27	C	28		cWW	cWW
38	IL_1ZZ5_003	1ZZ5	0.7895	2	Decoding loop related	C+D	RNA (15-mer) + RNA (14-mer)	G	7	G	10	*	C	26	A	27	C	28		cWW	cWW
39	IL_4ZC7_003	4ZC7	0.7474	2	Decoding loop related	A+B	RNA duplex	A	16	G	19	*	C	30	G	31	U	32		ncWW	cWW
40	IL_3T4B_001	3T4B	0.5196	1		A	HCV IRES pseudoknot domain plus crystallization module	G	135	G	137	*	U	287	A	288	C	289		cWW	cWW
41	IL_4V8P_166	4V8P	0.5248	0		D1	LSU rRNA	U	245	G	246	*	U	173	A	174	A	175		ncWW	cWW
42	IL_3MOJ_004	3MOJ	0.5173	0	Single stack bend	A	LSU rRNA	U	2522	G	2523	*	C	2540	A	2541	A	2542		cWW	cWW
43	IL_2QWY_008	2QWY	0.5987	0	Single stack bend	C	SAM-II riboswitch	U	21	G	22	*	C	43	U	44	A	45		cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CC*GAG	10
GAAG*CAC	9
AG*CCU	3
CU*AAG	3
UG*UAA	2
CA*UAG	2
UG*CAA	2
GUC*GUC	2
UC*GAA	1
CC*GGG	1
CA*UUG	1
GAU*GAC	1
UAC*GAG	1
GGAC*GGC	1
CAC*GAAG	1
AAAG*CGU	1
GAG*UAC	1
UG*CUA	1

Non-Watson-Crick part of the motif

Sequence	Counts
*A	20
AA*A	9
*C	3
A*A	3
*U	2
U*U	2
*G	1
GA*G	1
A*AA	1
AA*G	1

Release history

Release	3.2
Date	2018-09-26
Status	New id, no parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif IL_11156.1 Version IL_11156.1 of this group appears in releases 3.2 to 3.2 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_11156.1 Version IL_11156.1 of this group appears in releases 3.2 to 3.2

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Csv

Json