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Motif IL_12786.1 Version IL_12786.1 of this group appears in releases 3.2 to 3.6

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name for chain 1 2 3break 4 5 61-62-53-4
1 IL_4V88_4764V880.69870Other ILA6 SSU rRNAU1688A1689G1690*C1711A1712G1713ncWWncWW
2 IL_2R8S_0052R8S0.47245cWH basepair with bulged basesRP4-P6 RNA RIBOZYME DOMAING134U135A136*U182A187C189cWWcWHcWW
3 IL_5F5F_0035F5F0.38270Isolated cWH basepairFRNA (20-mer)G14G15A16*U5G6C7cWWcWHcWW
4 IL_5F5F_0015F5F0.39370Isolated cWH basepairBRNA (20-mer)G14G15A16*U5G6C7cWWcWHcWW
5 IL_3W3S_0033W3S0.34090Isolated cWH basepairBSelenocysteine transfer RNAA47|||NG47|||OC47|||P*G47|||AG47|||BU47|||CcWWcWHcWW
6 IL_3W3S_0063W3S0.34090Isolated cWH basepairBSelenocysteine transfer RNAA47|||N|43_455G47|||O|43_455C47|||P|43_455*G47|||A|43_455G47|||B|43_455U47|||C|43_455cWWcWHcWW
7 IL_4V88_4054V880.38600Isolated cWH basepairA6 SSU rRNAU406A407C408*G389G390A391cWWcWHcWW
8 IL_2XXA_0042XXA0.51581F SSRP RNAA19G20C21*G78G79U81cWWncWHcWW
9 IL_3D0M_0023D0M0.24000Isolated cWH basepairXRNA (16-mer)U10G11A12*U7||||16_545G8||||16_545A9||||16_545ncWWcWHcWW
10 IL_3D0M_0013D0M0.24000Isolated cWH basepairXRNA (16-mer)U10||||16_545G11||||16_545A12||||16_545*U7G8A9ncWWcWHcWW
11 IL_5J7L_0115J7L0.29030Isolated cWH basepairAA SSU rRNAG144G145G146*C176G177C178cWWcWHcWW
12 IL_4WF9_0454WF90.26640Isolated cWH basepairX LSU rRNAG1243G1244G1245*C1277G1278C1279cWWcWHcWW
13 IL_4V88_4534V880.27320Isolated cWH basepairA6 SSU rRNAC1323G1324A1325*U1290G1291G1292cWWcWHcWW
14 IL_4V88_4274V880.25900Isolated cWH basepairA6 SSU rRNAC848C849A850*U822G823G824cWWncWHcWW
15 IL_4KQ0_0044KQ00.14020Isolated cWH basepairB+ERNA (19-mer)C12G13G14*C6G7G8cWWcWHcWW
16 IL_4KQ0_0024KQ00.13940Isolated cWH basepairE+BRNA (19-mer)C12G13G14*C6G7G8cWWcWHcWW
17 IL_3CZW_0013CZW0.11810Isolated cWH basepairXRNA (16-mer)U10||||2_555G11||||2_555A12||||2_555*U7G8A9cWWcWHcWW
18 IL_3CZW_0023CZW0.11810Isolated cWH basepairXRNA (16-mer)U10G11A12*U7||||2_555G8||||2_555A9||||2_555cWWcWHcWW
19 IL_3R1C_0323R1C0.07960Isolated cWH basepairE+FRNA (8-mer)C5G6G7*C2G3G4cWWcWHcWW
20 IL_4KQ0_0034KQ00.07870Isolated cWH basepairE+BRNA (19-mer)C9G10G11*C9G10G11cWWcWHcWW
21 IL_3SJ2_0013SJ20.06410Isolated cWH basepairB+ARNA (17-mer)C13G14G15*C7G8G9cWWcWHcWW
22 IL_3SJ2_0033SJ20.05230Isolated cWH basepairA+BRNA (19-mer) + RNA (17-mer)C13G14G15*C7G8G9cWWcWHcWW
23 IL_3R1C_0183R1C0.00000Isolated cWH basepairR+QRNA (8-mer)C2G3G4*C5G6G7cWWcWHcWW
24 IL_3R1C_0123R1C0.04470Isolated cWH basepairK+LRNA (8-mer)C5G6G7*C2G3G4cWWcWHcWW
25 IL_3R1C_0113R1C0.05050Isolated cWH basepairL+KRNA (8-mer)C5G6G7*C2G3G4cWWcWHcWW
26 IL_3SJ2_0023SJ20.06200Isolated cWH basepairB+ARNA (17-mer)C10G11G12*C10G11G12cWWcWHcWW
27 IL_3R1C_0173R1C0.07570Isolated cWH basepairQ+RRNA (8-mer)C2G3G4*C5G6G7cWWcWHcWW
28 IL_3R1C_0313R1C0.09280Isolated cWH basepairE+FRNA (8-mer)C2G3G4*C5G6G7cWWcWHcWW
29 IL_4E5C_0014E5C0.11480Isolated cWH basepairA+BRNA (19-mer)C9G10G11*C9G10G11cWWcWHcWW
30 IL_3R1D_0023R1D0.16470Isolated cWH basepairB+ARNA (11-mer)C5G6G7*C5G6G7cWWcWHcWW
31 IL_4KQ0_0054KQ00.12280Isolated cWH basepairB+ERNA (19-mer)C15G16G17*C3G4G5cWWcWHcWW
32 IL_4KQ0_0014KQ00.12300Isolated cWH basepairE+BRNA (19-mer)C15G16G17*C3G4G5cWWcWHcWW
33 IL_406D_002406D0.26740Isolated cWH basepairA+ERNA (17-mer)U8||AG9||AG10||A*U25||AG26||AG27||AcWWncWHcWW
34 IL_3NJ7_0043NJ70.65260Isolated near basepairC+DRNA (10-mer)C6A7G8*C3A4G5cWWcWW
35 IL_3NJ7_0033NJ70.65800Isolated near basepairD+CRNA (10-mer)C6A7G8*C3A4G5cWWcWW
36 IL_4IOA_0294IOA0.69930Isolated near basepair (H)X LSU rRNAA883C884A885*U917A918U919cWWcWW
37 IL_2D6F_0012D6F0.62860Self complementaryF tRNAC927U928G929*C941G942G943cWWncWWcWW
38 IL_4WF9_0414WF90.73211Isolated non-canonical cWW pairX LSU rRNAG1075A1076G1078*C1165G1166C1167cWWncWWcWW
39 IL_364D_004364D0.79440Self complementaryB+CRNA (19-mer) + RNA (31-mer)G79U80G81*U95G96C97cWWncWWcWW
40 IL_4WF9_0184WF90.75980Isolated non-canonical cWW pairX LSU rRNAU638U639G640*U705U706G707cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CGG*CGG16
UGA*UGA4
GGA*UGC2
AGC*GGU2
GGG*CGC2
CAG*CAG2
UAG*CAG1
GUA*UAAUAAGC1
UAC*GGA1
AGC*GGGU1
CGA*UGG1
CCA*UGG1
UGG*UGG1
ACA*UAU1
CUG*CGG1
GAUG*CGC1
GUG*UGC1
UUG*UUG1
Non-Watson-Crick part of the motif
SequenceCounts
G*G28
A*A3
U*G2
U*AAUAAG1
A*G1
G*GG1
C*G1
C*A1
AU*G1
U*U1

Release history

Release3.33.43.53.63.2
Date2018-03-082018-04-062018-05-042018-06-012018-09-26
StatusExact matchExact matchExact matchExact matchNew id, no parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Isolated cWH basepair (30)
  • Self complementary (2)
  • Isolated near basepair (2)
  • Isolated non-canonical cWW pair (2)
  • cWH basepair with bulged bases (1)
  • (1)
  • Isolated near basepair (H) (1)
  • Other IL (1)
    • Basepair signature
    cWW-cWH-cWW
    Heat map statistics
    Min 0.00 | Avg 0.43 | Max 1.13
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