Motif IL_12786.1 Version IL_12786.1 of this group appears in releases 3.2 to 3.6

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3	break		4		5		6	1-6	2-5	3-4
1	IL_4V88_476	4V88	0.6987	0	Other IL	A6	SSU rRNA	U	1688	A	1689	G	1690	*	C	1711	A	1712	G	1713	ncWW		ncWW
2	IL_2R8S_005	2R8S	0.4724	5	cWH basepair with bulged bases	R	P4-P6 RNA RIBOZYME DOMAIN	G	134	U	135	A	136	*	U	182	A	187	C	189	cWW	cWH	cWW
3	IL_5F5F_003	5F5F	0.3827	0	Isolated cWH basepair	F	RNA (20-mer)	G	14	G	15	A	16	*	U	5	G	6	C	7	cWW	cWH	cWW
4	IL_5F5F_001	5F5F	0.3937	0	Isolated cWH basepair	B	RNA (20-mer)	G	14	G	15	A	16	*	U	5	G	6	C	7	cWW	cWH	cWW
5	IL_3W3S_003	3W3S	0.3409	0	Isolated cWH basepair	B	Selenocysteine transfer RNA	A	47\|\|\|N	G	47\|\|\|O	C	47\|\|\|P	*	G	47\|\|\|A	G	47\|\|\|B	U	47\|\|\|C	cWW	cWH	cWW
6	IL_3W3S_006	3W3S	0.3409	0	Isolated cWH basepair	B	Selenocysteine transfer RNA	A	47\|\|\|N\|43_455	G	47\|\|\|O\|43_455	C	47\|\|\|P\|43_455	*	G	47\|\|\|A\|43_455	G	47\|\|\|B\|43_455	U	47\|\|\|C\|43_455	cWW	cWH	cWW
7	IL_4V88_405	4V88	0.3860	0	Isolated cWH basepair	A6	SSU rRNA	U	406	A	407	C	408	*	G	389	G	390	A	391	cWW	cWH	cWW
8	IL_2XXA_004	2XXA	0.5158	1		F	SSRP RNA	A	19	G	20	C	21	*	G	78	G	79	U	81	cWW	ncWH	cWW
9	IL_3D0M_002	3D0M	0.2400	0	Isolated cWH basepair	X	RNA (16-mer)	U	10	G	11	A	12	*	U	7\|\|\|\|16_545	G	8\|\|\|\|16_545	A	9\|\|\|\|16_545	ncWW	cWH	cWW
10	IL_3D0M_001	3D0M	0.2400	0	Isolated cWH basepair	X	RNA (16-mer)	U	10\|\|\|\|16_545	G	11\|\|\|\|16_545	A	12\|\|\|\|16_545	*	U	7	G	8	A	9	ncWW	cWH	cWW
11	IL_5J7L_011	5J7L	0.2903	0	Isolated cWH basepair	AA	SSU rRNA	G	144	G	145	G	146	*	C	176	G	177	C	178	cWW	cWH	cWW
12	IL_4WF9_045	4WF9	0.2664	0	Isolated cWH basepair	X	LSU rRNA	G	1243	G	1244	G	1245	*	C	1277	G	1278	C	1279	cWW	cWH	cWW
13	IL_4V88_453	4V88	0.2732	0	Isolated cWH basepair	A6	SSU rRNA	C	1323	G	1324	A	1325	*	U	1290	G	1291	G	1292	cWW	cWH	cWW
14	IL_4V88_427	4V88	0.2590	0	Isolated cWH basepair	A6	SSU rRNA	C	848	C	849	A	850	*	U	822	G	823	G	824	cWW	ncWH	cWW
15	IL_4KQ0_004	4KQ0	0.1402	0	Isolated cWH basepair	B+E	RNA (19-mer)	C	12	G	13	G	14	*	C	6	G	7	G	8	cWW	cWH	cWW
16	IL_4KQ0_002	4KQ0	0.1394	0	Isolated cWH basepair	E+B	RNA (19-mer)	C	12	G	13	G	14	*	C	6	G	7	G	8	cWW	cWH	cWW
17	IL_3CZW_001	3CZW	0.1181	0	Isolated cWH basepair	X	RNA (16-mer)	U	10\|\|\|\|2_555	G	11\|\|\|\|2_555	A	12\|\|\|\|2_555	*	U	7	G	8	A	9	cWW	cWH	cWW
18	IL_3CZW_002	3CZW	0.1181	0	Isolated cWH basepair	X	RNA (16-mer)	U	10	G	11	A	12	*	U	7\|\|\|\|2_555	G	8\|\|\|\|2_555	A	9\|\|\|\|2_555	cWW	cWH	cWW
19	IL_3R1C_032	3R1C	0.0796	0	Isolated cWH basepair	E+F	RNA (8-mer)	C	5	G	6	G	7	*	C	2	G	3	G	4	cWW	cWH	cWW
20	IL_4KQ0_003	4KQ0	0.0787	0	Isolated cWH basepair	E+B	RNA (19-mer)	C	9	G	10	G	11	*	C	9	G	10	G	11	cWW	cWH	cWW
21	IL_3SJ2_001	3SJ2	0.0641	0	Isolated cWH basepair	B+A	RNA (17-mer)	C	13	G	14	G	15	*	C	7	G	8	G	9	cWW	cWH	cWW
22	IL_3SJ2_003	3SJ2	0.0523	0	Isolated cWH basepair	A+B	RNA (19-mer) + RNA (17-mer)	C	13	G	14	G	15	*	C	7	G	8	G	9	cWW	cWH	cWW
23	IL_3R1C_018	3R1C	0.0000	0	Isolated cWH basepair	R+Q	RNA (8-mer)	C	2	G	3	G	4	*	C	5	G	6	G	7	cWW	cWH	cWW
24	IL_3R1C_012	3R1C	0.0447	0	Isolated cWH basepair	K+L	RNA (8-mer)	C	5	G	6	G	7	*	C	2	G	3	G	4	cWW	cWH	cWW
25	IL_3R1C_011	3R1C	0.0505	0	Isolated cWH basepair	L+K	RNA (8-mer)	C	5	G	6	G	7	*	C	2	G	3	G	4	cWW	cWH	cWW
26	IL_3SJ2_002	3SJ2	0.0620	0	Isolated cWH basepair	B+A	RNA (17-mer)	C	10	G	11	G	12	*	C	10	G	11	G	12	cWW	cWH	cWW
27	IL_3R1C_017	3R1C	0.0757	0	Isolated cWH basepair	Q+R	RNA (8-mer)	C	2	G	3	G	4	*	C	5	G	6	G	7	cWW	cWH	cWW
28	IL_3R1C_031	3R1C	0.0928	0	Isolated cWH basepair	E+F	RNA (8-mer)	C	2	G	3	G	4	*	C	5	G	6	G	7	cWW	cWH	cWW
29	IL_4E5C_001	4E5C	0.1148	0	Isolated cWH basepair	A+B	RNA (19-mer)	C	9	G	10	G	11	*	C	9	G	10	G	11	cWW	cWH	cWW
30	IL_3R1D_002	3R1D	0.1647	0	Isolated cWH basepair	B+A	RNA (11-mer)	C	5	G	6	G	7	*	C	5	G	6	G	7	cWW	cWH	cWW
31	IL_4KQ0_005	4KQ0	0.1228	0	Isolated cWH basepair	B+E	RNA (19-mer)	C	15	G	16	G	17	*	C	3	G	4	G	5	cWW	cWH	cWW
32	IL_4KQ0_001	4KQ0	0.1230	0	Isolated cWH basepair	E+B	RNA (19-mer)	C	15	G	16	G	17	*	C	3	G	4	G	5	cWW	cWH	cWW
33	IL_406D_002	406D	0.2674	0	Isolated cWH basepair	A+E	RNA (17-mer)	U	8\|\|A	G	9\|\|A	G	10\|\|A	*	U	25\|\|A	G	26\|\|A	G	27\|\|A	cWW	ncWH	cWW
34	IL_3NJ7_004	3NJ7	0.6526	0	Isolated near basepair	C+D	RNA (10-mer)	C	6	A	7	G	8	*	C	3	A	4	G	5	cWW		cWW
35	IL_3NJ7_003	3NJ7	0.6580	0	Isolated near basepair	D+C	RNA (10-mer)	C	6	A	7	G	8	*	C	3	A	4	G	5	cWW		cWW
36	IL_4IOA_029	4IOA	0.6993	0	Isolated near basepair (H)	X	LSU rRNA	A	883	C	884	A	885	*	U	917	A	918	U	919	cWW		cWW
37	IL_2D6F_001	2D6F	0.6286	0	Self complementary	F	tRNA	C	927	U	928	G	929	*	C	941	G	942	G	943	cWW	ncWW	cWW
38	IL_4WF9_041	4WF9	0.7321	1	Isolated non-canonical cWW pair	X	LSU rRNA	G	1075	A	1076	G	1078	*	C	1165	G	1166	C	1167	cWW	ncWW	cWW
39	IL_364D_004	364D	0.7944	0	Self complementary	B+C	RNA (19-mer) + RNA (31-mer)	G	79	U	80	G	81	*	U	95	G	96	C	97	cWW	ncWW	cWW
40	IL_4WF9_018	4WF9	0.7598	0	Isolated non-canonical cWW pair	X	LSU rRNA	U	638	U	639	G	640	*	U	705	U	706	G	707	cWW		cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CGG*CGG	16
UGA*UGA	4
GGA*UGC	2
AGC*GGU	2
GGG*CGC	2
CAG*CAG	2
UAG*CAG	1
GUA*UAAUAAGC	1
UAC*GGA	1
AGC*GGGU	1
CGA*UGG	1
CCA*UGG	1
UGG*UGG	1
ACA*UAU	1
CUG*CGG	1
GAUG*CGC	1
GUG*UGC	1
UUG*UUG	1

Non-Watson-Crick part of the motif

Sequence	Counts
G*G	28
A*A	3
U*G	2
U*AAUAAG	1
A*G	1
G*GG	1
C*G	1
C*A	1
AU*G	1
U*U	1

Release history

Release	3.3	3.4	3.5	3.6	3.2
Date	2018-03-08	2018-04-06	2018-05-04	2018-06-01	2018-09-26
Status	Exact match	Exact match	Exact match	Exact match	New id, no parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: Isolated cWH basepair (30)
Self complementary (2)
Isolated near basepair (2)
Isolated non-canonical cWW pair (2)
cWH basepair with bulged bases (1)
(1)
Isolated near basepair (H) (1)
Other IL (1)
Basepair signature: cWW-cWH-cWW
Heat map statistics: Min 0.00 | Avg 0.43 | Max 1.13

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Coloring options: Nucleotide numbers

Motif IL_12786.1 Version IL_12786.1 of this group appears in releases 3.2 to 3.6 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_12786.1 Version IL_12786.1 of this group appears in releases 3.2 to 3.6

Download

Csv

Json