Motif IL_15066.1 Version IL_15066.1 of this group appears in releases 3.77 to 3.79
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | 4-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1U6B_004 | 1U6B | 0.0000 | 1 | B | 197-MER | C | 96 | A | 98 | G | 99 | C | 100 | * | G | 119 | A | 120 | A | 121 | G | 122 | cWW | cWW | cWW | ||
| 2 | IL_6DTD_001 | 6DTD | 0.5274 | 0 | Tandem non-canonical cWW pairs | C | RNA (37-MER) | A | 31 | A | 32 | A | 33 | C | 34 | * | G | 5 | C | 6 | A | 7 | U | 8 | cWW | cWw | ncWB | cWW |
| 3 | IL_5LQO_002 | 5LQO | 0.6765 | 0 | Tandem non-canonical cWW pairs | B+A | RNA (10-mer) | G | 4 | G | 5 | A | 6 | C | 7 | * | G | 4 | G | 5 | A | 6 | C | 7 | cWW | cWW | cWW | cWW |
| 4 | IL_4V88_432 | 4V88 | 0.6599 | 0 | Tandem non-canonical cWW pairs | A6 | SSU rRNA | G | 885 | U | 886 | A | 887 | U | 888 | * | A | 924 | G | 925 | A | 926 | C | 927 | cWW | cWW | cWW | |
| 5 | IL_4V88_430 | 4V88 | 0.6037 | 0 | Tandem non-canonical cWW pairs | A6 | SSU rRNA | G | 871 | G | 872 | U | 873 | C | 874 | * | G | 953 | G | 954 | A | 955 | C | 956 | cWW | cWW | cWW | |
| 6 | IL_1L9A_005 | 1L9A | 0.5847 | 0 | Tandem non-canonical cWW pairs | B | signal recognition particle RNA S domain | G | 156 | A | 157 | C | 158 | C | 159 | * | G | 138 | A | 139 | C | 140 | C | 141 | cWW | ncWWa | ncWW | cWW |
| 7 | IL_4K27_001 | 4K27 | 0.6380 | 0 | Tandem non-canonical cWW pairs | U | Myotonic Dystrophy Type 2 RNA | C | 4 | C | 5 | U | 6 | G | 7 | * | C | 49 | C | 50 | U | 51 | G | 52 | cWW | cWW | cWW | cWW |
| 8 | IL_3CUL_002 | 3CUL | 0.5775 | 0 | Tandem non-canonical cWW pairs | C | RNA (92-MER) | C | 87 | A | 88 | G | 89 | C | 90 | * | G | 56 | U | 57 | G | 58 | G | 59 | cWW | ncWW | ncWWa | cWW |
| 9 | IL_413D_001 | 413D | 0.5515 | 0 | Tandem non-canonical cWW pairs | A | RNA (13-mer) | U | 6 | U | 7 | C | 8 | G | 9 | * | U | 6||||2_555 | U | 7||||2_555 | C | 8||||2_555 | G | 9||||2_555 | cWW | cWW | cWW | cWW |
| 10 | IL_255D_001 | 255D | 0.5557 | 0 | Tandem non-canonical cWW pairs | A | RNA (12-mer) | U | 5 | U | 6 | C | 7 | G | 8 | * | U | 5||||2_656 | U | 6||||2_656 | C | 7||||2_656 | G | 8||||2_656 | cWW | cWW | cWW | cWW |
| 11 | IL_422D_001 | 422D | 0.5570 | 0 | Tandem non-canonical cWW pairs | A+B | RNA (12-mer) | U | 7 | U | 8 | C | 9 | G | 10 | * | U | 19 | U | 20 | C | 21 | G | 22 | cWW | cWW | cWW | cWW |
| 12 | IL_4ERD_002 | 4ERD | 0.5541 | 0 | Tandem non-canonical cWW pairs | C+D | RNA (22-mer) | U | 127 | U | 128 | C | 141 | G | 142 | * | U | 127 | U | 128 | C | 141 | G | 142 | cWW | cWW | cWW | cWW |
| 13 | IL_1ICG_001 | 1ICG | 0.5303 | 0 | Tandem non-canonical cWW pairs | A+B | RNA (9-mer) | U | 3 | U | 4 | C | 5 | G | 6 | * | U | 3 | U | 4 | C | 5 | G | 6 | cWW | cWW | cWW | cWW |
| 14 | IL_1IHA_001 | 1IHA | 0.5250 | 0 | Tandem non-canonical cWW pairs | A+B | RNA (9-mer) | U | 3 | U | 4 | C | 5 | G | 6 | * | U | 3 | U | 4 | C | 5 | G | 6 | cWW | cWW | cWW | cWW |
| 15 | IL_1QBP_002 | 1QBP | 0.5419 | 0 | Tandem non-canonical cWW pairs | B+A | RNA (15-mer) | U | 22 | U | 23 | C | 24 | G | 25 | * | U | 7 | U | 8 | C | 9 | G | 10 | cWW | ncWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUCG*UUCG | 7 |
| CAAGC*GAAG | 1 |
| AAAC*GCAU | 1 |
| GGAC*GGAC | 1 |
| GUAU*AGAC | 1 |
| GGUC*GGAC | 1 |
| GACC*GACC | 1 |
| CCUG*CCUG | 1 |
| CAGC*GUGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UC*UC | 7 |
| AAG*AA | 1 |
| AA*CA | 1 |
| GA*GA | 1 |
| UA*GA | 1 |
| GU*GA | 1 |
| AC*AC | 1 |
| CU*CU | 1 |
| AG*UG | 1 |
- Annotations
-
- Tandem non-canonical cWW pairs (14)
- (1)
- Basepair signature
- cWW-cWW-cWW-cWW
- Heat map statistics
- Min 0.03 | Avg 0.35 | Max 0.68
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