Motif IL_40090.5 Version IL_40090.5 of this group appears in releases 1.5 to 1.5
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3U5F_093 | 3U5F | 0.9047 | 0 | 6 | 18S rRNA | C | 1711 | A | 1712 | G | 1713 | * | U | 1688 | A | 1689 | G | 1690 | ncWW | ncWW | ||
| 2 | IL_3U5H_085 | 3U5H | 0.8750 | 4 | 5 | 25S rRNA | A | 1901 | G | 1902 | G | 1906 | * | C | 2333 | U | 2334 | U | 2336 | cWW | cWW | ||
| 3 | IL_4A1B_081 | 4A1B | 0.8823 | 4 | 1 | 26S RRNA | A | 1925 | G | 1926 | G | 1930 | * | C | 2328 | U | 2329 | U | 2331 | cWW | cWW | ||
| 4 | IL_2QBG_045 | 2QBG | 0.3544 | 1 | B | 23S rRNA | C | 1196 | G | 1197 | U | 1198 | * | A | 1247 | U | 1249 | G | 1250 | cWW | cWS | cWW | |
| 5 | IL_3V2F_042 | 3V2F | 0.3401 | 1 | A | 23S Ribosomal RNA | C | 1196 | G | 1197 | U | 1198 | * | A | 1247 | U | 1249 | G | 1250 | cWW | cWS | cWW | |
| 6 | IL_1S72_046 | 1S72 | 0.3193 | 1 | Isolated cWS basepair (H) | 0 | LSU rRNA | C | 1301 | G | 1302 | C | 1303 | * | G | 1351 | C | 1353 | G | 1354 | cWW | cWS | cWW |
| 7 | IL_3V2F_030 | 3V2F | 0.2456 | 0 | A | 23S Ribosomal RNA | U | 905 | G | 906 | U | 907 | * | A | 870 | U | 871 | A | 872 | cWW | ncWS | cWW | |
| 8 | IL_3U5H_052 | 3U5H | 0.0000 | 0 | 5 | 25S rRNA | A | 1133 | G | 1134 | A | 1135 | * | U | 1123 | U | 1124 | U | 1125 | cWW | ncWS | cWW | |
| 9 | IL_3U5H_062 | 3U5H | 0.5388 | 1 | 5 | 25S rRNA | A | 1428 | U | 1430 | G | 1431 | * | C | 1376 | G | 1377 | U | 1378 | cWW | cSW | cWW | |
| 10 | IL_4IOA_043 | 4IOA | 0.5535 | 1 | Isolated cWS basepair (H) | X | LSU rRNA | A | 1260 | U | 1262 | G | 1263 | * | C | 1210 | G | 1211 | U | 1212 | cWW | cSW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AGUCGG*CUGU | 2 |
| CGU*AGUG | 2 |
| AGUG*CGU | 2 |
| CAG*UAG | 1 |
| CGC*GACG | 1 |
| UGU*AUA | 1 |
| AGA*UUU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUCG*UG | 2 |
| G*GU | 2 |
| G*U | 2 |
| GU*G | 2 |
| A*A | 1 |
| G*AC | 1 |
Release history
| Release | 1.5 |
|---|---|
| Date | 2013-08-03 |
| Status | Updated, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_40090.5 | Only in the parent motif |
|---|---|---|---|
| IL_40090.4 Compare | IL_1S72_046, IL_3U5H_052, IL_2QBG_045, IL_3U5F_093, IL_4IOA_043, IL_3U5H_062, IL_3V2F_030, IL_3V2F_042 | IL_3U5H_085, IL_4A1B_081 | IL_2AW7_049, IL_3U5F_067, IL_4KYY_002, IL_1FJG_041 |
| IL_21304.2 Compare | IL_3U5H_085, IL_4A1B_081 | IL_1S72_046, IL_3U5H_052, IL_2QBG_045, IL_3U5F_093, IL_4IOA_043, IL_3U5H_062, IL_3V2F_030, IL_3V2F_042 | IL_2XZM_006, IL_2QBG_082, IL_3V2F_079, IL_4IOA_077, IL_1S72_062, IL_3U5H_100, IL_1S72_076, IL_3V2F_012, IL_2XZM_064 |
Children motifs
| Child motif | Common motif instances | Only in IL_40090.5 | Only in the child motif |
|---|---|---|---|
| IL_17212.1 Compare | IL_1S72_046, IL_3U5H_052, IL_2QBG_045, IL_4IOA_043, IL_3U5H_062, IL_3V2F_030, IL_3V2F_042 | IL_3U5F_093, IL_3U5H_085, IL_4A1B_081 | IL_4ERD_003, IL_3V2F_025, IL_2ZI0_001 |
| IL_15709.1 Compare | IL_3U5F_093, IL_3U5H_085, IL_4A1B_081 | IL_1S72_046, IL_3U5H_052, IL_2QBG_045, IL_4IOA_043, IL_3U5H_062, IL_3V2F_030, IL_3V2F_042 | IL_3U5F_012 |
- Annotations
-
- (8)
- Isolated cWS basepair (H) (2)
- Basepair signature
- cWW-cWS-cWW
- Heat map statistics
- Min 0.08 | Avg 0.62 | Max 0.97
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