Motif IL_70173.1 Version IL_70173.1 of this group appears in releases 1.10 to 1.13
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3U5F_093 | 3U5F | 0.7649 | 0 | 6 | 18S rRNA | U | 1688 | A | 1689 | G | 1690 | * | C | 1711 | A | 1712 | G | 1713 | ncWW | ncWW | |
| 2 | IL_3BNL_002 | 3BNL | 0.7075 | 1 | A+B | A site of bacterial ribosome | C | 6 | A | 7 | C | 8 | * | G | 15 | A | 17 | G | 18 | cWW | cwW | cWW |
| 3 | IL_4M4O_004 | 4M4O | 0.0000 | 0 | B | RNA (59-MER) | G | 26 | A | 27 | G | 28 | * | C | 39 | A | 40 | C | 41 | cWW | cWW | |
| 4 | IL_4M6D_013 | 4M6D | 0.1538 | 0 | H | aptamer | G | 26 | A | 27 | G | 28 | * | C | 39 | A | 40 | C | 41 | cWW | cWW | |
| 5 | IL_3U5H_085 | 3U5H | 0.6638 | 4 | 5 | 25S rRNA | C | 2333 | U | 2334 | U | 2336 | * | A | 1901 | G | 1902 | G | 1906 | cWW | cWW | |
| 6 | IL_4A1B_081 | 4A1B | 0.6853 | 4 | 1 | 26S RRNA | C | 2328 | U | 2329 | U | 2331 | * | A | 1925 | G | 1926 | G | 1930 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAG*CAC | 2 |
| CUGU*AGUCGG | 2 |
| UAG*CAG | 1 |
| CAC*GAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| A*A | 3 |
| UG*GUCG | 2 |
| A*AA | 1 |
Release history
| Release | 1.10 | 1.11 | 1.12 | 1.13 |
|---|---|---|---|---|
| Date | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_70173.1 | Only in the parent motif |
|---|---|---|---|
| IL_15709.1 Compare | IL_3U5F_093, IL_3U5H_085, IL_4A1B_081 | IL_4M4O_004, IL_3BNL_002, IL_4M6D_013 | IL_3U5F_012 |
| IL_75447.1 Compare | IL_3BNL_002 | IL_4A1B_081, IL_3U5F_093, IL_3U5H_085, IL_4M4O_004, IL_4M6D_013 | IL_2GDI_005, IL_2GDI_001 |
Children motifs
- Annotations
-
- (6)
- Basepair signature
- cWW-L-R-cWW
- Heat map statistics
- Min 0.08 | Avg 0.57 | Max 0.91
Coloring options: