Motif IL_70173.1 Version IL_70173.1 of this group appears in releases 1.10 to 1.13

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name		1		2		3	break		4		5		6	1-6	2-5	3-4
1	IL_3U5F_093	3U5F	0.7649	0	6	18S rRNA	U	1688	A	1689	G	1690	*	C	1711	A	1712	G	1713	ncWW		ncWW
2	IL_3BNL_002	3BNL	0.7075	1	A+B	A site of bacterial ribosome	C	6	A	7	C	8	*	G	15	A	17	G	18	cWW	cwW	cWW
3	IL_4M4O_004	4M4O	0.0000	0	B	RNA (59-MER)	G	26	A	27	G	28	*	C	39	A	40	C	41	cWW		cWW
4	IL_4M6D_013	4M6D	0.1538	0	H	aptamer	G	26	A	27	G	28	*	C	39	A	40	C	41	cWW		cWW
5	IL_3U5H_085	3U5H	0.6638	4	5	25S rRNA	C	2333	U	2334	U	2336	*	A	1901	G	1902	G	1906	cWW		cWW
6	IL_4A1B_081	4A1B	0.6853	4	1	26S RRNA	C	2328	U	2329	U	2331	*	A	1925	G	1926	G	1930	cWW		cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GAG*CAC	2
CUGU*AGUCGG	2
UAG*CAG	1
CAC*GAAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
A*A	3
UG*GUCG	2
A*AA	1

Release history

Release	1.10	1.11	1.12	1.13
Date	2014-01-04	2014-02-01	2014-03-01	2014-03-29
Status	New id, 2 parents	Exact match	Exact match	Exact match

Parent motifs

Parent motif	Common motif instances	Only in IL_70173.1	Only in the parent motif
IL_15709.1 Compare	IL_3U5F_093, IL_3U5H_085, IL_4A1B_081	IL_4M4O_004, IL_3BNL_002, IL_4M6D_013	IL_3U5F_012
IL_75447.1 Compare	IL_3BNL_002	IL_4A1B_081, IL_3U5F_093, IL_3U5H_085, IL_4M4O_004, IL_4M6D_013	IL_2GDI_005, IL_2GDI_001

Children motifs

Child motif	Common motif instances	Only in IL_70173.1	Only in the child motif
IL_71837.1 Compare	IL_3U5H_085, IL_4A1B_081	IL_3U5F_093, IL_4M4O_004, IL_3BNL_002, IL_4M6D_013	IL_2QBG_040, IL_4BPP_006, IL_3U5F_006, IL_4A1C_001, IL_1S72_062, IL_4IOA_037
IL_66654.1 Compare	IL_4M4O_004, IL_4M6D_013	IL_3U5F_093, IL_3U5H_085, IL_4A1B_081, IL_3BNL_002	IL_3U5F_012, IL_4JK0_003
IL_16029.1 Compare	IL_3BNL_002	IL_4A1B_081, IL_3U5F_093, IL_3U5H_085, IL_4M4O_004, IL_4M6D_013	IL_2GDI_005, IL_4A1B_107, IL_2GDI_001, IL_3U5H_109
IL_67813.1 Compare	IL_3U5F_093	IL_4A1B_081, IL_3U5H_085, IL_3BNL_002, IL_4M4O_004, IL_4M6D_013	IL_2AW7_049, IL_1S72_046, IL_4NVV_044, IL_2QBG_045, IL_4IOA_043, IL_3U5H_062, IL_4BPP_065, IL_3U5H_052, IL_3U5F_065, IL_4NVV_032, IL_3U5F_067, IL_1FJG_041, IL_1VW3_035, IL_1VW3_070

Annotations: (6)
Basepair signature: cWW-L-R-cWW
Heat map statistics: Min 0.08 | Avg 0.57 | Max 0.91

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