Motif IL_17030.2 Version IL_17030.2 of this group appears in releases 0.2 to 0.2
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-3 | 2-9 | 3-8 | 4-7 | 5-6 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3MUR_002 | 3MUR | 0.6199 | 0 | R | G | 41 | G | 42 | A | 43 | C | 44 | G | 45 | * | C | 22 | A | 23 | A | 24 | A | 25 | C | 26 | cWW | tSH | ntHS | cWW | |||
| 2 | IL_3F1H_015 | 3F1H | 0.6239 | 0 | A | C | 618|||B | G | 619 | G | 620 | A | 621 | G | 622 | * | U | 606 | U | 607 | A | 608 | A | 609|||A | G | 609|||B | cWW | tSH | ntHW | cWW | |||
| 3 | IL_2ZJR_050 | 2ZJR | 0.6745 | 0 | X | C | 1383 | G | 1384 | C | 1385 | A | 1386 | G | 1387 | * | U | 1370 | G | 1371 | A | 1372 | G | 1373 | G | 1374 | cWW | tSH | tWH | tHS | cWW | ||
| 4 | IL_2ZJR_071 | 2ZJR | 0.5774 | 0 | Triple sheared (H) | X | U | 1848 | G | 1849 | G | 1850 | A | 1851 | G | 1852 | * | C | 1865 | G | 1866 | A | 1867 | A | 1868 | A | 1869 | cWW | ntSH | ntSH | ntHS | cWW | |
| 5 | IL_3F1H_026 | 3F1H | 0.4772 | 0 | A | U | 858 | G | 859 | U | 860 | A | 861 | G | 862 | * | C | 915 | G | 916 | A | 917 | A | 918 | G | 919 | cWW | ncSW | tHS | cWW | |||
| 6 | IL_2QWY_001 | 2QWY | 0.4983 | 0 | A | C | 16 | G | 17 | U | 18 | A | 19 | U | 20 | * | A | 46 | A | 47 | A | 48 | A | 49 | G | 50 | cWW | tSH | tHS | cWW | |||
| 7 | IL_2ZJR_088 | 2ZJR | 0.3408 | 0 | Triple sheared (H) | X | C | 2445 | C | 2446 | G | 2447 | A | 2448 | G | 2449 | * | C | 2459 | G | 2460 | G | 2461 | C | 2462 | G | 2463 | cWW | cWB | tHS | cWW | ||
| 8 | IL_3F1H_092 | 3F1H | 0.0000 | 0 | A | C | 2466 | C | 2467 | G | 2468 | A | 2469 | G | 2470 | * | C | 2480 | G | 2481 | G | 2482 | C | 2483 | G | 2484 | cWW | ncWB | cWW | ||||
| 9 | IL_2ZJR_012 | 2ZJR | 0.6343 | 0 | AAA cross-strand stack (H) | X | C | 629 | G | 630 | G | 631 | A | 632 | G | 633 | * | U | 616 | U | 617 | A | 618 | A | 619 | G | 620 | cWW | tSH | cWW | |||
| 10 | IL_1S72_021 | 1S72 | 0.6338 | 0 | AAA cross-strand stack (H) | 0 | G | 679 | G | 680 | G | 681 | A | 682 | G | 683 | * | C | 663 | U | 664 | A | 665 | A | 666 | C | 667 | cWW | tSH | ntHW | cWW | ||
| 11 | IL_3G78_002 | 3G78 | 0.6703 | 0 | A | G | 113 | G | 114 | A | 115 | C | 116 | G | 117 | * | C | 70 | U | 71 | A | 72 | A | 73 | C | 74 | cWW | tSH | ntSH | ntHS | cWW | ||
| 12 | IL_1S72_023 | 1S72 | 0.6802 | 0 | tSH-tHW-tHS (H) | 0 | C | 705 | G | 706 | C | 707 | A | 708 | G | 709 | * | C | 719 | G | 720 | A | 721 | G | 722 | G | 723 | cWW | tSH | tWH | tHS | cWW | |
| 13 | IL_2QWY_004 | 2QWY | 0.7107 | 0 | B | C | 16 | G | 17 | U | 18 | A | 19 | U | 20 | * | A | 46 | A | 47 | A | 48 | A | 49 | G | 50 | cWW | tWH | tHS | cWW | |||
| 14 | IL_2QWY_007 | 2QWY | 0.8472 | 0 | tSH-tHW-tHS | C | C | 16 | G | 17 | U | 18 | A | 19 | U | 20 | * | A | 46 | A | 47 | A | 48 | A | 49 | G | 50 | cWW | tSH | tWH | tHS | cWW | |
| 15 | IL_1FJG_033 | 1FJG | 0.8100 | 0 | tSH-tHW-tHS (H) | A | G | 799 | G | 800 | U | 801 | A | 802 | G | 803 | * | C | 779 | A | 780 | A | 781 | A | 782 | C | 783 | cWW | tSH | tWH | tHS | cWW | |
| 16 | IL_1FJG_023 | 1FJG | 0.7570 | 0 | tSH-tHW-tHS (H) | A | U | 580 | G | 581 | U | 582 | A | 583 | G | 584 | * | U | 757 | G | 758 | A | 759 | G | 760 | G | 761 | cWW | tWH | tHS | cWW | ||
| 17 | IL_3F1H_051 | 3F1H | 0.7273 | 0 | A | C | 1370 | G | 1371 | U | 1372 | A | 1373 | G | 1374 | * | U | 1357 | G | 1358 | A | 1359 | A | 1360 | G | 1361 | cWW | tSH | ntWH | tHS | cWW | ||
| 18 | IL_1S72_055 | 1S72 | 0.7492 | 0 | tSH-tHW-tHS (H) | 0 | G | 1542 | G | 1543 | U | 1544 | C | 1545 | G | 1546 | * | U | 1639 | C | 1640 | A | 1641 | A | 1642 | C | 1643 | cWW | tSH | tWH | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGUAU*AAAAG | 3 |
| CGGAG*UUAAG | 2 |
| CCGAG*CGGCG | 2 |
| GGACG*CAAAC | 1 |
| CGCAG*UGAGG | 1 |
| UGGAG*CGAAA | 1 |
| UGUAG*CGAAG | 1 |
| GGGAG*CUAAC | 1 |
| GGACG*CUAAC | 1 |
| CGCAG*CGAGG | 1 |
| GGUAG*CAAAC | 1 |
| UGUAG*UGAGG | 1 |
| CGUAG*UGAAG | 1 |
| GGUCG*UCAAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUA*AAA | 4 |
| GGA*UAA | 3 |
| GCA*GAG | 2 |
| GUA*GAA | 2 |
| CGA*GGC | 2 |
| GAC*AAA | 1 |
| GGA*GAA | 1 |
| GAC*UAA | 1 |
| GUA*GAG | 1 |
| GUC*CAA | 1 |
Release history
| Release | 0.2 |
|---|---|
| Date | 2011-12-08 |
| Status | Updated, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_17030.2 | Only in the parent motif |
|---|---|---|---|
| IL_17030.1 Compare | IL_3F1H_026, IL_1S72_055, IL_3F1H_092, IL_2ZJR_050, IL_2ZJR_012, IL_1FJG_033, IL_3MUR_002, IL_1S72_021, IL_1FJG_023, IL_1S72_023, IL_2ZJR_088, IL_2QWY_007, IL_2ZJR_071, IL_2QWY_004, IL_3G78_002, IL_3F1H_015, IL_2QWY_001 | IL_3F1H_051 | |
| IL_61636.1 Compare | IL_3F1H_051 | IL_3F1H_026, IL_1S72_055, IL_2QWY_004, IL_3F1H_092, IL_2ZJR_050, IL_2ZJR_012, IL_3F1H_015, IL_3MUR_002, IL_1S72_021, IL_1FJG_023, IL_1S72_023, IL_3G78_002, IL_2QWY_007, IL_2ZJR_071, IL_2ZJR_088, IL_1FJG_033, IL_2QWY_001 | IL_1S72_034 |
Children motifs
| Child motif | Common motif instances | Only in IL_17030.2 | Only in the child motif |
|---|---|---|---|
| IL_43241.1 Compare | IL_3F1H_026, IL_2ZJR_012, IL_3F1H_015, IL_3MUR_002, IL_1S72_021, IL_1FJG_023, IL_3G78_002, IL_2ZJR_071, IL_2QWY_001 | IL_1S72_055, IL_3F1H_092, IL_2ZJR_050, IL_1FJG_033, IL_1S72_023, IL_2QWY_007, IL_3F1H_051, IL_2ZJR_088, IL_2QWY_004 | |
| IL_21490.1 Compare | IL_1S72_055, IL_3F1H_092, IL_2ZJR_050, IL_1FJG_033, IL_1S72_023, IL_2ZJR_088, IL_3F1H_051, IL_2QWY_007 | IL_3F1H_026, IL_2ZJR_012, IL_3F1H_015, IL_3MUR_002, IL_1S72_021, IL_1FJG_023, IL_3G78_002, IL_2ZJR_071, IL_2QWY_004, IL_2QWY_001 | |
| IL_43956.2 Compare | IL_2QWY_004 | IL_3F1H_026, IL_1S72_055, IL_3F1H_092, IL_2ZJR_050, IL_2ZJR_012, IL_1FJG_033, IL_3MUR_002, IL_1S72_021, IL_1FJG_023, IL_1S72_023, IL_2ZJR_088, IL_3F1H_051, IL_2QWY_007, IL_2ZJR_071, IL_3G78_002, IL_3F1H_015, IL_2QWY_001 | IL_3G78_003, IL_1S72_034 |
- Annotations
-
- (9)
- tSH-tHW-tHS (H) (4)
- AAA cross-strand stack (H) (2)
- Triple sheared (H) (2)
- tSH-tHW-tHS (1)
- Basepair signature
- Heat map statistics
- Min 0.17 | Avg 0.59 | Max 1.02
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