Motif IL_38328.1 Version IL_38328.1 of this group appears in releases 1.15 to 1.15
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-8 | 3-7 | 4-5 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3CUN_001 | 3CUN | 0.8814 | 1 | C | RNA (92-MER) | C | 22 | A | 23 | G | 24 | G | 25 | * | U | 44 | A | 45 | U | 47 | G | 48 | G | 49 | cWW | cWW | cWB | cWW |
| 2 | IL_1U6B_004 | 1U6B | 0.0000 | 0 | B | 197-MER | G | 119 | A | 120 | A | 121 | G | 122 | * | C | 96 | A | 97 | A | 98 | G | 99 | C | 100 | cWW | cWW | cWW | |
| 3 | IL_1Y0Q_002 | 1Y0Q | 0.3549 | 0 | A | Group I catalytic intron | G | 111 | A | 112 | A | 113 | A | 114 | * | U | 92 | A | 93 | A | 94 | G | 95 | C | 96 | cWW | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAGG*UAUUGG | 1 |
| GAAG*CAAGC | 1 |
| GAAA*UAAGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AA*AAG | 2 |
| AG*AUUG | 1 |
Release history
| Release | 1.15 |
|---|---|
| Date | 2014-06-20 |
| Status | > 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_38328.1 | Only in the parent motif |
|---|---|---|---|
| IL_25307.1 Compare | IL_1Y0Q_002 | IL_1U6B_004, IL_3CUN_001 | |
| IL_52173.1 Compare | IL_1U6B_004 | IL_1Y0Q_002, IL_3CUN_001 | IL_1MFQ_001, IL_1J2B_001 |
| IL_65554.1 Compare | IL_3CUN_001 | IL_1Y0Q_002, IL_1U6B_004 | IL_4BPP_081, IL_2AW7_010, IL_3U5F_081, IL_2AW7_061, IL_1VW3_071, IL_1FJG_008, IL_1FJG_055 |
Children motifs
| Child motif | Common motif instances | Only in IL_38328.1 | Only in the child motif |
|---|---|---|---|
| IL_38488.1 Compare | IL_1Y0Q_002 | IL_1U6B_004, IL_3CUN_001 | IL_4A1B_029 |
| IL_17204.2 Compare | IL_3CUN_001 | IL_1Y0Q_002, IL_1U6B_004 | IL_4A1B_075, IL_4CUV_129 |
| IL_10743.1 Compare | IL_1U6B_004 | IL_1Y0Q_002, IL_3CUN_001 | IL_1MFQ_001, IL_1VX2_015, IL_4CUV_104, IL_1J2B_001, IL_1VWW_129 |
- Annotations
-
- (3)
- Basepair signature
- cWW-cWW-bif-R-cWW
- Heat map statistics
- Min 0.35 | Avg 0.48 | Max 0.93
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