#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3break 4 5 6 71-72-63-43-5
1 IL_1S72_0531S720.000000 LSU rRNAA1465C1466C1467*G1475A1476C1477U1478cWWcWBcWW
2 IL_3F1H_0303F1H0.39530A23S RRNAG875C876U877*A899A900A901C902cWWncWWcWWntSH
3 IL_2QEK_0022QEK0.88280A+BHIV-1 subtype F DIS genomic RNAC15A16C17*G7A8A9G10cWWcWW
4 IL_3MUR_0013MUR0.94591RC92U mutant c-di-GMP riboswitchC11A12C13*G94A95G97G98cWWcWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
ACC*GACU1
GCU*AAAC1
CAC*GAAG1
CAC*GAUGG1
Non-Watson-Crick part of the motif
SequenceCounts
C*AC1
C*AA1
A*AA1
A*AUG1
Annotations
  • (4)
  • Basepair signature
    Heat map statistics
    Min 0.40 | Avg 0.56 | Max 0.95
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