Motif IL_19986.2 Version IL_19986.2 of this group appears in releases 1.18 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-8 | 3-6 | 3-7 | 4-5 | 6-7 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3J7A_071 | 3J7A | 0.3584 | 0 | A | SSU rRNA | G | 1935 | C | 1936 | C | 1937 | C | 1938 | * | G | 2052 | U | 2053 | A | 2054 | A | 2055 | C | 2056 | cWW | cWW | cSW | cWW | |||
| 2 | IL_4CUX_082 | 4CUX | 0.3455 | 0 | 2 | 18S RRNA | G | 1638 | C | 1639 | C | 1640 | C | 1641 | * | G | 1760 | U | 1761 | A | 1762 | A | 1763 | C | 1764 | cWW | cWW | cSW | cWW | |||
| 3 | IL_4BPP_081 | 4BPP | 0.0966 | 0 | A | 18S RRNA | G | 1610 | C | 1611 | C | 1612 | C | 1613 | * | G | 1713 | U | 1714 | A | 1715 | A | 1716 | C | 1717 | cWW | cWW | ncSW | cWW | cSH | ||
| 4 | IL_1FJG_055 | 1FJG | 0.0000 | 0 | A | SSU rRNA | G | 1401 | C | 1402 | C | 1403 | C | 1404 | * | G | 1497 | U | 1498 | A | 1499 | A | 1500 | C | 1501 | cWW | cWW | cSW | cWW | cSH | ||
| 5 | IL_2AW7_061 | 2AW7 | 0.0742 | 0 | A | 16S ribosomal RNA | G | 1401 | C | 1402 | C | 1403 | C | 1404 | * | G | 1497 | U | 1498 | A | 1499 | A | 1500 | C | 1501 | cWW | cWW | cSW | cWW | cSH | ||
| 6 | IL_3U5F_081 | 3U5F | 0.0920 | 0 | 6 | 18S rRNA | G | 1638 | C | 1639 | C | 1640 | C | 1641 | * | G | 1760 | U | 1761 | A | 1762 | A | 1763 | C | 1764 | cWW | cWW | cSW | cWW | cSH | ||
| 7 | IL_4W23_073 | 4W23 | 0.1785 | 0 | 2 | 18S ribosomal RNA | G | 1702 | C | 1703 | C | 1704 | C | 1705 | * | G | 1829 | U | 1830 | A | 1831 | A | 1832 | C | 1833 | cWW | ncWW | cSW | cWW | cSH | ||
| 8 | IL_1VW3_071 | 1VW3 | 0.5087 | 0 | A | 21S ribosomal RNA | G | 2578 | A | 2579 | A | 2580 | U | 2581 | * | A | 2468 | U | 2469 | A | 2470 | A | 2471 | C | 2472 | cWW | cwW | cWW | cSH | |||
| 9 | IL_3LOA_001 | 3LOA | 0.6892 | 0 | UAA/GAN variation | A+B | RNA (21-mer) + RNA (23-mer) | G | 1401 | C | 1402 | C | 1403 | C | 1404 | * | G | 1497 | U | 1498 | A | 1499 | A | 1500 | C | 1501 | cWW | ncWW | cWW | |||
| 10 | IL_3BNT_002 | 3BNT | 0.8044 | 0 | Tandem non-canonical cWW pairs | A | A site of human mitochondrial ribosome | C | 6 | A | 7 | C | 8 | C | 9 | * | G | 14||||4_665 | C | 15||||4_665 | A | 16||||4_665 | A | 17||||4_665 | G | 18||||4_665 | cWW | cwW | ncBW | cWW | ||
| 11 | IL_3BNT_005 | 3BNT | 0.8044 | 0 | Tandem non-canonical cWW pairs | A | A site of human mitochondrial ribosome | C | 6||||4_665 | A | 7||||4_665 | C | 8||||4_665 | C | 9||||4_665 | * | G | 14 | C | 15 | A | 16 | A | 17 | G | 18 | cWW | cwW | ncBW | cWW | ||
| 12 | IL_1FJG_008 | 1FJG | 0.6982 | 0 | A | SSU rRNA | G | 227 | A | 228 | U | 229 | G | 230 | * | C | 132 | U | 133 | A | 134 | C | 135 | C | 136 | cWW | cWw | cWW | ||||
| 13 | IL_2AW7_010 | 2AW7 | 0.7322 | 0 | A | 16S ribosomal RNA | G | 227 | A | 228 | U | 229 | G | 230 | * | C | 132 | U | 133 | G | 134 | C | 135 | C | 136 | cWW | cWw | cWW | ||||
| 14 | IL_1VX6_136 | 1VX6 | 0.7729 | 2 | A | 28S ribosomal RNA | G | 3719 | G | 3720 | U | 3721 | G | 3722 | * | C | 3765 | U | 3766 | U | 3767 | C | 3770 | C | 3771 | cWW | ncWW | cWw | cWW | |||
| 15 | IL_2O3V_002 | 2O3V | 0.8859 | 0 | Decoding loop related | A+B | RNA (23-mer) | C | 7 | G | 8 | C | 9 | U | 10 | * | A | 38 | A | 39 | A | 40 | A | 41 | G | 42 | cWW | cWWa | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GCCC*GUAAC | 8 |
| CACC*GCAAG | 2 |
| GAAU*AUAAC | 1 |
| GAUG*CUACC | 1 |
| GAUG*CUGCC | 1 |
| GGUG*CUUAUCC | 1 |
| CGCU*AAAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CC*UAA | 8 |
| AC*CAA | 2 |
| AA*UAA | 1 |
| AU*UAC | 1 |
| AU*UGC | 1 |
| GU*UUAUC | 1 |
| GC*AAA | 1 |
Release history
| Release | 1.18 |
|---|---|
| Date | 2014-10-07 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_19986.2 | Only in the parent motif |
|---|---|---|---|
| IL_19986.1 Compare | IL_3LOA_001, IL_4BPP_081, IL_1VX6_136, IL_4CUX_082, IL_3J7A_071, IL_2O3V_002, IL_3BNT_005, IL_2AW7_010, IL_3U5F_081, IL_2AW7_061, IL_3BNT_002, IL_1VW3_071, IL_1FJG_008, IL_1FJG_055 | IL_4W23_073 | IL_1VX2_073 |
Children motifs
This motif has no children motifs.- Annotations
-
- (11)
- Tandem non-canonical cWW pairs (2)
- Decoding loop related (1)
- UAA/GAN variation (1)
- Basepair signature
- cWW-cWW-cSW-cWW-cSH-cWW
- Heat map statistics
- Min 0.00 | Avg 0.54 | Max 0.95
Coloring options: