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Motif IL_19986.1 Version IL_19986.1 of this group appears in releases 1.17 to 1.17

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4break 5 6 7 8 91-92-83-63-74-56-7
1 IL_3J7A_0713J7A0.35840A SSU rRNAG1935C1936C1937C1938*G2052U2053A2054A2055C2056cWWcWWcSWcWW
2 IL_4CUX_0824CUX0.34550218S RRNAG1638C1639C1640C1641*G1760U1761A1762A1763C1764cWWcWWcSWcWW
3 IL_3U5F_0813U5F0.09200618S rRNAG1638C1639C1640C1641*G1760U1761A1762A1763C1764cWWcWWcSWcWWcSH
4 IL_2AW7_0612AW70.07420A16S ribosomal RNAG1401C1402C1403C1404*G1497U1498A1499A1500C1501cWWcWWcSWcWWcSH
5 IL_1FJG_0551FJG0.00000A SSU rRNAG1401C1402C1403C1404*G1497U1498A1499A1500C1501cWWcWWcSWcWWcSH
6 IL_4BPP_0814BPP0.09660A18S RRNAG1610C1611C1612C1613*G1713U1714A1715A1716C1717cWWcWWncSWcWWcSH
7 IL_1VX2_0731VX20.18040218S ribosomal RNAG1702C1703C1704C1705*G1829U1830A1831A1832C1833cWWncWWcSWcWW
8 IL_1VW3_0711VW30.50870A21S ribosomal RNAG2578A2579A2580U2581*A2468U2469A2470A2471C2472cWWcwWcWWcSH
9 IL_3LOA_0013LOA0.68920UAA/GAN variationA+BRNA (21-mer) + RNA (23-mer)G1401C1402C1403C1404*G1497U1498A1499A1500C1501cWWncWWcWW
10 IL_3BNT_0023BNT0.80440Tandem non-canonical cWW pairsAA site of human mitochondrial ribosomeC6A7C8C9*G14||||4_665C15||||4_665A16||||4_665A17||||4_665G18||||4_665cWWcwWncBWcWW
11 IL_3BNT_0053BNT0.80440Tandem non-canonical cWW pairsAA site of human mitochondrial ribosomeC6||||4_665A7||||4_665C8||||4_665C9||||4_665*G14C15A16A17G18cWWcwWncBWcWW
12 IL_1FJG_0081FJG0.69820A SSU rRNAG227A228U229G230*C132U133A134C135C136cWWcWwcWW
13 IL_2AW7_0102AW70.73220A16S ribosomal RNAG227A228U229G230*C132U133G134C135C136cWWcWwcWW
14 IL_1VX6_1361VX60.77292A28S ribosomal RNAG3719G3720U3721G3722*C3765U3766U3767C3770C3771cWWncWWcWwcWW
15 IL_2O3V_0022O3V0.88590Decoding loop relatedA+BRNA (23-mer)C7G8C9U10*A38A39A40A41G42cWWcWWacWW

3D structures

Complete motif including flanking bases
SequenceCounts
GCCC*GUAAC8
CACC*GCAAG2
GAAU*AUAAC1
GAUG*CUACC1
GAUG*CUGCC1
GGUG*CUUAUCC1
CGCU*AAAAG1
Non-Watson-Crick part of the motif
SequenceCounts
CC*UAA8
AC*CAA2
AA*UAA1
AU*UAC1
AU*UGC1
GU*UUAUC1
GC*AAA1

Release history

Release1.17
Date2014-09-04
Status> 2 parents

Parent motifs

Parent motifCommon motif instancesOnly in IL_19986.1Only in the parent motif
IL_65554.2
Compare		IL_4CUX_082, IL_4BPP_081, IL_2AW7_010, IL_3U5F_081, IL_2AW7_061, IL_1VW3_071, IL_1FJG_008, IL_1FJG_055IL_3LOA_001, IL_1VX2_073, IL_1VX6_136, IL_3J7A_071, IL_2O3V_002, IL_3BNT_005, IL_3BNT_002
IL_31555.6
Compare		IL_3LOA_001, IL_3BNT_005, IL_3BNT_002IL_1VX2_073, IL_4BPP_081, IL_1VX6_136, IL_4CUX_082, IL_3J7A_071, IL_2O3V_002, IL_2AW7_010, IL_3U5F_081, IL_2AW7_061, IL_1VW3_071, IL_1FJG_008, IL_1FJG_055IL_4A1B_026, IL_1GID_010, IL_1X8W_002, IL_4A1B_022, IL_3FS0_001, IL_3FTM_001, IL_3BNQ_002, IL_4A1B_120, IL_1GID_003, IL_4FAW_010
IL_13959.6
Compare		IL_2O3V_002IL_3LOA_001, IL_1VX2_073, IL_4BPP_081, IL_1VX6_136, IL_4CUX_082, IL_3J7A_071, IL_3BNT_005, IL_2AW7_010, IL_3U5F_081, IL_2AW7_061, IL_3BNT_002, IL_1VW3_071, IL_1FJG_008, IL_1FJG_055IL_4BPP_003, IL_4IOA_058, IL_4CUX_090, IL_4CUV_147, IL_2QBG_088, IL_3U5F_085, IL_1VW3_072, IL_4A1B_117, IL_4A1B_132, IL_3U5H_141, IL_3U5H_120, IL_3U5F_088, IL_3D0U_002, IL_4CUX_086, IL_4IOA_083, IL_4NVV_085, IL_1SAQ_002, IL_4A1B_005, IL_1FJG_059, IL_4A1B_007, IL_1S72_098, IL_3DIR_002, IL_2QBG_017, IL_3U5F_013, IL_2IL9_002, IL_4BPP_087, IL_4BPP_085, IL_1SA9_001, IL_2AW7_065, IL_4CUV_124

Children motifs

Child motifCommon motif instancesOnly in IL_19986.1Only in the child motif
IL_19986.2
Compare		IL_3LOA_001, IL_4BPP_081, IL_1VX6_136, IL_4CUX_082, IL_3J7A_071, IL_2O3V_002, IL_3BNT_005, IL_2AW7_010, IL_3U5F_081, IL_2AW7_061, IL_3BNT_002, IL_1VW3_071, IL_1FJG_008, IL_1FJG_055IL_1VX2_073IL_4W23_073
Annotations
  • (11)
  • Tandem non-canonical cWW pairs (2)
  • Decoding loop related (1)
  • UAA/GAN variation (1)
    • Basepair signature
    cWW-cWW-cSW-cWW-cSH-cWW
    Heat map statistics
    Min 0.00 | Avg 0.54 | Max 0.95
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