Motif IL_21059.1 Version IL_21059.1 of this group appears in releases 0.2 to 0.3
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | ||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_3OWZ_006 | 3OWZ | 1.1595 | 2 | B | Domain II of glycine riboswitch | C | 31 | A | 34 | G | 35 | * | C | 70 | A | 71 | G | 72 | cWW | tHS | cWW | |
2 | IL_3OWZ_002 | 3OWZ | 0.7073 | 2 | A | Domain II of glycine riboswitch | C | 31 | A | 34 | G | 35 | * | C | 70 | A | 71 | G | 72 | cWW | tHS | cWW | |
3 | IL_1FJG_003 | 1FJG | 0.0000 | 3 | A | SSU rRNA | C | 47 | A | 50 | G | 52 | * | U | 359 | A | 360 | G | 361 | cWW | cWW | ||
4 | IL_2ZJR_081 | 2ZJR | 0.6245 | 2 | Isolated tHS basepair with bulges (H) | X | LSU rRNA | C | 2276 | A | 2277 | A | 2278 | * | U | 2296 | G | 2297 | G | 2300 | cWW | ntHS | cWW |
5 | IL_3F1H_003 | 3F1H | 0.6389 | 1 | A | 23S RRNA | C | 433 | C | 435 | C | 436 | * | G | 43 | A | 44 | G | 45 | cWW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CGAAG*CAG | 2 |
CCUAAG*UAG | 1 |
CAA*UGUAG | 1 |
GAG*CUCC | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
GAA*A | 2 |
CUAA*A | 1 |
A*GUA | 1 |
A*UC | 1 |
Release history
Parent motifs
Parent motif | Common motif instances | Only in IL_21059.1 | Only in the parent motif |
---|---|---|---|
IL_54175.1 Compare | IL_3OWZ_006, IL_1FJG_003, IL_3OWZ_002 | IL_2ZJR_081, IL_3F1H_003 | |
IL_33923.1 Compare | IL_3F1H_003 | IL_2ZJR_081, IL_3OWZ_002, IL_3OWZ_006, IL_1FJG_003 | IL_2ZJR_018, IL_1S72_029, IL_3F1H_021, IL_1S72_003, IL_2QBZ_004, IL_3F1H_042, IL_1MMS_002, IL_2ZJR_039, IL_1MMS_004 |
IL_31791.1 Compare | IL_2ZJR_081 | IL_3F1H_003, IL_3OWZ_002, IL_3OWZ_006, IL_1FJG_003 |
Children motifs
Child motif | Common motif instances | Only in IL_21059.1 | Only in the child motif |
---|---|---|---|
IL_21059.2 Compare | IL_1FJG_003, IL_3OWZ_002, IL_3OWZ_006, IL_3F1H_003 | IL_2ZJR_081 | |
IL_73059.1 Compare | IL_2ZJR_081 | IL_1FJG_003, IL_3OWZ_002, IL_3OWZ_006, IL_3F1H_003 | IL_1NTB_003, IL_1S72_078 |
- Annotations
-
- (4)
- Isolated tHS basepair with bulges (H) (1)
- Basepair signature
- Heat map statistics
- Min 0.07 | Avg 0.66 | Max 1.32
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