Motif IL_28572.2 Version IL_28572.2 of this group appears in releases 1.5 to 1.14
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 1-15 | 2-5 | 2-12 | 6-9 | 6-12 | 7-8 | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_4BPP_032 | 4BPP | 0.3599 | 1 | A | 18S RRNA | G | 556 | U | 557 | G | 558 | C | 559 | C | 560 | A | 561 | G | 562 | * | C | 569 | G | 570 | G | 571 | U | 572 | A | 574 | U | 575 | U | 576 | C | 577 | cWW | cSW | tWH | ntHS | ntWW | cWW |
2 | IL_3U5F_032 | 3U5F | 0.2746 | 1 | 6 | 18S rRNA | G | 562 | U | 563 | G | 564 | C | 565 | C | 566 | A | 567 | G | 568 | * | C | 575 | G | 576 | G | 577 | U | 578 | A | 580 | U | 581 | U | 582 | C | 583 | cWW | cSW | tWH | tHS | cWW | |
3 | IL_1FJG_021 | 1FJG | 0.0000 | 1 | A | SSU rRNA | G | 515 | U | 516 | G | 517 | C | 518 | C | 519 | A | 520 | G | 521 | * | C | 528 | G | 529 | G | 530 | U | 531 | A | 533 | U | 534 | A | 535 | C | 536 | cWW | cSW | tWH | tHS | ntWW | cWW |
4 | IL_2AW7_028 | 2AW7 | 0.0959 | 1 | A | 16S ribosomal RNA | G | 515 | U | 516 | G | 517 | C | 518 | C | 519 | A | 520 | G | 521 | * | C | 528 | G | 529 | G | 530 | U | 531 | A | 533 | U | 534 | A | 535 | C | 536 | cWW | ncSW | tWH | ntHS | ntWW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
GUGCCAG*CGGUAAUUC | 2 |
GUGCCAG*CGGUAAUAC | 2 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
UGCCA*GGUAAUU | 2 |
UGCCA*GGUAAUA | 2 |
Release history
Release | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 | 1.14 |
---|---|---|---|---|---|---|---|---|---|---|
Date | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-05 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 | 2014-04-27 |
Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
Parent motif | Common motif instances | Only in IL_28572.2 | Only in the parent motif |
---|---|---|---|
IL_28572.1 Compare | IL_3U5F_032, IL_2AW7_028, IL_1FJG_021 | IL_4BPP_032 | IL_2XZM_031 |
Children motifs
Child motif | Common motif instances | Only in IL_28572.2 | Only in the child motif |
---|---|---|---|
IL_28572.3 Compare | IL_4BPP_032, IL_3U5F_032, IL_2AW7_028, IL_1FJG_021 | IL_4CUX_032 |
- Annotations
-
- (4)
- Basepair signature
- cWW-R-R-tWH-cSW-L-R-R-L-tHS-cWW
- Heat map statistics
- Min 0.10 | Avg 0.20 | Max 0.37
Coloring options: