#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4 5 6 7break 8 9 10 11 12 13 14 151-152-52-126-96-127-8
1 IL_4BPP_0324BPP0.35991A18S RRNAG556U557G558C559C560A561G562*C569G570G571U572A574U575U576C577cWWcSWtWHntHSntWWcWW
2 IL_3U5F_0323U5F0.27461618S rRNAG562U563G564C565C566A567G568*C575G576G577U578A580U581U582C583cWWcSWtWHtHScWW
3 IL_1FJG_0211FJG0.00001A SSU rRNAG515U516G517C518C519A520G521*C528G529G530U531A533U534A535C536cWWcSWtWHtHSntWWcWW
4 IL_2AW7_0282AW70.09591A16S ribosomal RNAG515U516G517C518C519A520G521*C528G529G530U531A533U534A535C536cWWncSWtWHntHSntWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
GUGCCAG*CGGUAAUUC2
GUGCCAG*CGGUAAUAC2
Non-Watson-Crick part of the motif
SequenceCounts
UGCCA*GGUAAUU2
UGCCA*GGUAAUA2

Release history

Release1.51.61.71.81.91.101.111.121.131.14
Date2013-08-032013-08-312013-09-282013-11-052013-12-072014-01-042014-02-012014-03-012014-03-292014-04-27
StatusUpdated, 1 parentExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

Parent motifCommon motif instancesOnly in IL_28572.2Only in the parent motif
IL_28572.1
Compare
IL_3U5F_032, IL_2AW7_028, IL_1FJG_021IL_4BPP_032IL_2XZM_031

Children motifs

Child motifCommon motif instancesOnly in IL_28572.2Only in the child motif
IL_28572.3
Compare
IL_4BPP_032, IL_3U5F_032, IL_2AW7_028, IL_1FJG_021IL_4CUX_032
Annotations
  • (4)
  • Basepair signature
    cWW-R-R-tWH-cSW-L-R-R-L-tHS-cWW
    Heat map statistics
    Min 0.10 | Avg 0.20 | Max 0.37
    Help

    Coloring options:

    Copyright 2025 BGSU RNA group. Page generated in 0.1091 s