Motif IL_28572.4 Version IL_28572.4 of this group appears in releases 1.17 to 1.17
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | 13 | 1-13 | 2-5 | 2-12 | 6-9 | 6-12 | 7-8 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1VX2_028 | 1VX2 | 0.3315 | 3 | 2 | G | 611 | U | 612 | G | 613 | C | 614 | C | 615 | A | 616 | G | 617 | * | C | 624 | G | 625 | G | 626 | U | 627 | A | 629 | C | 632 | ntHS | cWW | |||||
| 2 | IL_4CUX_032 | 4CUX | 0.1761 | 3 | 2 | G | 562 | U | 563 | G | 564 | C | 565 | C | 566 | A | 567 | G | 568 | * | C | 575 | G | 576 | G | 577 | U | 578 | A | 580 | C | 583 | ncWW | cSW | ntHS | cWW | |||
| 3 | IL_4BPP_032 | 4BPP | 0.1314 | 3 | A | G | 556 | U | 557 | G | 558 | C | 559 | C | 560 | A | 561 | G | 562 | * | C | 569 | G | 570 | G | 571 | U | 572 | A | 574 | C | 577 | cWW | cSW | tWH | ntHS | ntWW | cWW | |
| 4 | IL_3J7A_026 | 3J7A | 0.0000 | 3 | Kink-turn related (H) | A | G | 569 | U | 570 | G | 571 | C | 572 | C | 573 | A | 574 | G | 575 | * | C | 582 | G | 583 | G | 584 | U | 585 | A | 587 | C | 590 | cWW | ncSW | tWH | tHS | ntWW | cWW |
| 5 | IL_3U5F_032 | 3U5F | 0.1102 | 3 | 6 | G | 562 | U | 563 | G | 564 | C | 565 | C | 566 | A | 567 | G | 568 | * | C | 575 | G | 576 | G | 577 | U | 578 | A | 580 | C | 583 | cWW | cSW | tWH | tHS | cWW | ||
| 6 | IL_2AW7_028 | 2AW7 | 0.2494 | 3 | A | G | 515 | U | 516 | G | 517 | C | 518 | C | 519 | A | 520 | G | 521 | * | C | 528 | G | 529 | G | 530 | U | 531 | A | 533 | C | 536 | cWW | ncSW | tWH | ntHS | ntWW | cWW | |
| 7 | IL_1FJG_021 | 1FJG | 0.2624 | 3 | A | G | 515 | U | 516 | G | 517 | C | 518 | C | 519 | A | 520 | G | 521 | * | C | 528 | G | 529 | G | 530 | U | 531 | A | 533 | C | 536 | cWW | cSW | tWH | tHS | ntWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUGCCAG*CGGUAAUUC | 5 |
| GUGCCAG*CGGUAAUAC | 2 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGCCA*GGUAAUU | 5 |
| UGCCA*GGUAAUA | 2 |
Release history
| Release | 1.17 |
|---|---|
| Date | 2014-09-04 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_28572.4 | Only in the parent motif |
|---|---|---|---|
| IL_28572.3 Compare | IL_1FJG_021, IL_4BPP_032, IL_3U5F_032, IL_2AW7_028, IL_4CUX_032 | IL_1VX2_028, IL_3J7A_026 |
Children motifs
| Child motif | Common motif instances | Only in IL_28572.4 | Only in the child motif |
|---|---|---|---|
| IL_28572.5 Compare | IL_4CUX_032, IL_3J7A_026, IL_4BPP_032, IL_3U5F_032, IL_1FJG_021, IL_2AW7_028 | IL_1VX2_028 |
- Annotations
-
- (6)
- Kink-turn related (H) (1)
- Basepair signature
- cWW-tWH-cSW-L-R-R-L-tHS-cWW
- Heat map statistics
- Min 0.10 | Avg 0.22 | Max 0.44
Coloring options: